Ss1.1-Pig4-TMW8064B08.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGTGGTCGGCGCGGCGTGCTTGGCGGCAGCGGCGGCGGCTCTGGGCACTGGGGGCCC TGCTGGGAGGAGACAGGCAAGCAAGGCGGCGGCGGCGGCGGCGGCGGTTGCGGTTGCGTG TCTGCAGGTCGCAGCGTCAGGCTTCGGGAGCTGCATCGGCACAGGGAGGAGGATGGCGGA GTCATCGGACAAGCTCTATCGGGTCGAGTATGCTAAGAGTGGGCGCGCCTCCTGCAAGAA ATGCAGCGAGAGCATCCCCAAGGACTCGCTCCGGATGGCCATCATGGTGCAGTCGCCCAT GTTCGATGGGAAAGTCCCGCACTGGTACCACTTCTCCTGCTTCTGGAAGGTCGGCCACGC CATCCGGCACCCTGACGTCGAGGTGGACGGGTTCTCCGAGCTCCGGTGGGACGACCAGCA GAAAGTCAAGAAGACGGCGGAGGCTGGAGGAGTGACAGGCAAAGGCCAAGATGGGGTTGG CAGCAAGGCGGAGAAGACGCTGGGTGACTTCGCGGCCGAGTATGCCAAGTCCAACAGAAG CACGTGCAAGGGCTGCATGGAGAAGATCGAGAAGGGCCACGTGCGCCTGTCCAAGAAGAT GCTGGACCCCGAGAAGCCCCAGCTGGGCATGATCGACCGCTGGTACCACCCAAACTGCTT TGTTCAGAACCGGGAGGAGCTGGGCTTCCGGCCCGAGTACAGCGCCAGCCAGCTTAAGGG CTTCAGCCTGCTCACCGCAGAGGACAAAGAAGCGCTGAAGAAGCAGCTCCCGGGCATCAA GAGTGAAGGAAAGAGAAAAGGTGACGAGGTAGATGGAGTGGATGGAGTGGCCAAGAACAA ATATAAAAAAAGAATTCCCACCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGTGGTCGGCGCGGCGTGCTTGGCGGCAGCGGCGGCGGCTCTGGGCACTGGGGGCCC TGCTGGGAGGAGACAGGCAAGCAAGGCGGCGGCGGCGGCGGCGGCGGTTGCGGTTGCGTG TCTGCAGGTCGCAGCGTCAGGCTTCGGGAGCTGCATCGGCACAGGGAGGAGGATGGCGGA GTCATCGGACAAGCTCTATCGGGTCGAGTATGCTAAGAGTGGGCGCGCCTCCTGCAAGAA ATGCAGCGAGAGCATCCCCAAGGACTCGCTCCGGATGGCCATCATGGTGCAGTCGCCCAT GTTCGATGGGAAAGTCCCGCACTGGTACCACTTCTCCTGCTTCTGGAAGGTCGGCCACGC CATCCGGCACCCTGACGTCGAGGTGGACGGGTTCTCCGAGCTCCGGTGGGACGACCAGCA GAAAGTCAAGAAGACGGCGGAGGCTGGAGGAGTGACAGGCAAAGGCCAAGATGGGGTTGG CAGCAAGGCGGAGAAGACGCTGGGTGACTTCGCGGCCGAGTATGCCAAGTCCAACAGAAG CACGTGCAAGGGCTGCATGGAGAAGATCGAGAAGGGCCACGTGCGCCTGTCCAAGAAGAT GCTGGACCCCGAGAAGCCCCAGCTGGGCATGATCGACCGCTGGTACCACCCAAACTGCTT TGTTCAGAACCGGGAGGAGCTGGGCTTCCGGCCCGAGTACAGCGCCAGCCAGCTTAAGGG CTTCAGCCTGCTCACCGCAGAGGACAAAGAAGCGCTGAAGAAGCAGCTCCCGGGCATCAA GAGTGAAGGAAAGAGAAAAGGTGACGAGGTAGATGGAGTGGATGGAGTGGCCAAGAACAA ATATAAAAAAAGAATTCCCACCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 652-787, - strand, RNAz p=0.799853 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 652-787, - strand, RNAz p=0.799853 |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 291-459, gnl|bosTau2|chr16 (17728228-17728060) | |
| 291-459, gnl|canFam2|chr27 (27685484-27685647) | |
| 291-459, gnl|canFam2|chr7 (41478180-41477986) | |
| 291-459, gnl|danRer3|chr20 (51789860-51789684) | |
| 291-459, gnl|danRer3|chr20 (51789704-51789856) | |
| 291-459, gnl|dasNov1|scaffold_106587 (181-5) | |
| 291-459, gnl|dasNov1|scaffold_62663 (10463-10307) | |
| 291-459, gnl|echTel1|scaffold_280399 (47080-46881) | |
| 291-459, gnl|echTel1|scaffold_280399 (46903-47061) | |
| 291-459, gnl|fr1|chrUn (53188717-53188539) | |
| 291-459, gnl|fr1|chrUn (53188556-53188713) | |
| 291-459, gnl|galGal2|chr3 (13368674-13368493) | |
| 291-459, gnl|galGal2|chr3 (13368515-13368665) | |
| 291-459, gnl|hg17|chr1 (222896635-222896834) | |
| 291-459, gnl|Hg17|chr1 (222896817-222896649) | |
| 291-459, gnl|hg17|chr13 (110387227-110387390) | |
| 291-459, gnl|loxAfr1|scaffold_38717 (8338-8537) | |
| 291-459, gnl|loxAfr1|scaffold_38717 (8515-8357) | |
| 291-459, gnl|mm7|chr1 (180553900-180553716) | |
| 291-459, gnl|mm7|chr1 (180553732-180553890) | |
| 291-459, gnl|Mm7|chr1 (180553725-180553893) | |
| 291-459, gnl|monDom2|scaffold_13 (34528026-34528211) | |
| 291-459, gnl|monDom2|scaffold_13 (34528193-34528030) | |
| 291-459, gnl|oryCun1|scaffold_209514 (5294-5095) | |
| 291-459, gnl|oryCun1|scaffold_209514 (5112-5275) | |
| 291-459, gnl|panTro1|chr1 (206715188-206715387) | |
| 291-459, gnl|panTro1|chr1 (206715365-206715207) | |
| 291-459, gnl|rheMac2|chr1 (143968611-143968414) | |
| 291-459, gnl|rheMac2|chr1 (143968431-143968594) | |
| 291-459, gnl|rn3|chr13 (96503300-96503107) | |
| 291-459, gnl|rn3|chr13 (96503123-96503281) | |
| 291-459, gnl|tetNig1|chr14 (4922407-4922583) | |
| 291-459, gnl|tetNig1|chr14 (4922563-4922411) | |
| 291-459, gnl|xenTro1|scaffold_215 (1296423-1296577) | |
| 291-459, gnl|xenTro1|scaffold_6171 (6206-6039) | |
| 573-787, gnl|bosTau2|chr16 (17719522-17719308) | |
| 573-787, gnl|canFam2|chr27 (27685765-27685980) | |
| 573-787, gnl|canFam2|chr7 (41487298-41487014) | |
| 573-787, gnl|danRer3|chr20 (51792931-51792681) | |
| 573-787, gnl|danRer3|chr20 (51792710-51792925) | |
| 573-787, gnl|dasNov1|scaffold_26464 (2047-1791) | |
| 573-787, gnl|dasNov1|scaffold_26464 (1822-2037) | |
| 573-787, gnl|echTel1|scaffold_28433 (24-276) | |
| 573-787, gnl|echTel1|scaffold_28433 (248-33) | |
| 573-787, gnl|fr1|chrUn (53189247-53189005) | |
| 573-787, gnl|fr1|chrUn (53189022-53189237) | |
| 573-787, gnl|galGal2|chr3 (13370748-13370517) | |
| 573-787, gnl|galGal2|chr3 (13370518-13370733) | |
| 573-787, gnl|hg17|chr1 (222884824-222885107) | |
| 573-787, gnl|Hg17|chr1 (222885062-222884848) | |
| 573-787, gnl|hg17|chr13 (110387509-110387724) | |
| 573-787, gnl|loxAfr1|scaffold_38717 (1305-1555) | |
| 573-787, gnl|loxAfr1|scaffold_38717 (1532-1317) | |
| 573-787, gnl|mm7|chr1 (180559453-180559186) | |
| 573-787, gnl|mm7|chr1 (180559228-180559443) | |
| 573-787, gnl|Mm7|chr1 (180559227-180559441) | |
| 573-787, gnl|monDom2|scaffold_13 (34521738-34521985) | |
| 573-787, gnl|monDom2|scaffold_13 (34521962-34521747) | |
| 573-787, gnl|panTro1|chr1 (206703394-206703677) | |
| 573-787, gnl|panTro1|chr1 (206703633-206703418) | |
| 573-787, gnl|rheMac2|chr1 (143980395-143980112) | |
| 573-787, gnl|rheMac2|chr1 (143980156-143980371) | |
| 573-787, gnl|rn3|chr13 (96507878-96507611) | |
| 573-787, gnl|rn3|chr13 (96507653-96507868) | |
| 573-787, gnl|tetNig1|chr14 (4921899-4922129) | |
| 573-787, gnl|tetNig1|chr14 (4922120-4921905) | |
| 573-787, gnl|xenTro1|scaffold_215 (1298623-1298347) | |
| 573-787, gnl|xenTro1|scaffold_215 (1298383-1298598) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 291-459, gnl|bosTau2|chr16 (17728228-17728060) | |
| 291-459, gnl|canFam2|chr27 (27685484-27685647) | |
| 291-459, gnl|canFam2|chr7 (41478180-41477986) | |
| 291-459, gnl|danRer3|chr20 (51789860-51789684) | |
| 291-459, gnl|danRer3|chr20 (51789704-51789856) | |
| 291-459, gnl|dasNov1|scaffold_106587 (181-5) | |
| 291-459, gnl|dasNov1|scaffold_62663 (10463-10307) | |
| 291-459, gnl|echTel1|scaffold_280399 (47080-46881) | |
| 291-459, gnl|echTel1|scaffold_280399 (46903-47061) | |
| 291-459, gnl|fr1|chrUn (53188717-53188539) | |
| 291-459, gnl|fr1|chrUn (53188556-53188713) | |
| 291-459, gnl|galGal2|chr3 (13368674-13368493) | |
| 291-459, gnl|galGal2|chr3 (13368515-13368665) | |
| 291-459, gnl|hg17|chr1 (222896635-222896834) | |
| 291-459, gnl|Hg17|chr1 (222896817-222896649) | |
| 291-459, gnl|hg17|chr13 (110387227-110387390) | |
| 291-459, gnl|loxAfr1|scaffold_38717 (8338-8537) | |
| 291-459, gnl|loxAfr1|scaffold_38717 (8515-8357) | |
| 291-459, gnl|mm7|chr1 (180553900-180553716) | |
| 291-459, gnl|mm7|chr1 (180553732-180553890) | |
| 291-459, gnl|Mm7|chr1 (180553725-180553893) | |
| 291-459, gnl|monDom2|scaffold_13 (34528026-34528211) | |
| 291-459, gnl|monDom2|scaffold_13 (34528193-34528030) | |
| 291-459, gnl|oryCun1|scaffold_209514 (5294-5095) | |
| 291-459, gnl|oryCun1|scaffold_209514 (5112-5275) | |
| 291-459, gnl|panTro1|chr1 (206715188-206715387) | |
| 291-459, gnl|panTro1|chr1 (206715365-206715207) | |
| 291-459, gnl|rheMac2|chr1 (143968611-143968414) | |
| 291-459, gnl|rheMac2|chr1 (143968431-143968594) | |
| 291-459, gnl|rn3|chr13 (96503300-96503107) | |
| 291-459, gnl|rn3|chr13 (96503123-96503281) | |
| 291-459, gnl|tetNig1|chr14 (4922407-4922583) | |
| 291-459, gnl|tetNig1|chr14 (4922563-4922411) | |
| 291-459, gnl|xenTro1|scaffold_215 (1296423-1296577) | |
| 291-459, gnl|xenTro1|scaffold_6171 (6206-6039) | |
| 573-787, gnl|bosTau2|chr16 (17719522-17719308) | |
| 573-787, gnl|canFam2|chr27 (27685765-27685980) | |
| 573-787, gnl|canFam2|chr7 (41487298-41487014) | |
| 573-787, gnl|danRer3|chr20 (51792931-51792681) | |
| 573-787, gnl|danRer3|chr20 (51792710-51792925) | |
| 573-787, gnl|dasNov1|scaffold_26464 (2047-1791) | |
| 573-787, gnl|dasNov1|scaffold_26464 (1822-2037) | |
| 573-787, gnl|echTel1|scaffold_28433 (24-276) | |
| 573-787, gnl|echTel1|scaffold_28433 (248-33) | |
| 573-787, gnl|fr1|chrUn (53189247-53189005) | |
| 573-787, gnl|fr1|chrUn (53189022-53189237) | |
| 573-787, gnl|galGal2|chr3 (13370748-13370517) | |
| 573-787, gnl|galGal2|chr3 (13370518-13370733) | |
| 573-787, gnl|hg17|chr1 (222884824-222885107) | |
| 573-787, gnl|Hg17|chr1 (222885062-222884848) | |
| 573-787, gnl|hg17|chr13 (110387509-110387724) | |
| 573-787, gnl|loxAfr1|scaffold_38717 (1305-1555) | |
| 573-787, gnl|loxAfr1|scaffold_38717 (1532-1317) | |
| 573-787, gnl|mm7|chr1 (180559453-180559186) | |
| 573-787, gnl|mm7|chr1 (180559228-180559443) | |
| 573-787, gnl|Mm7|chr1 (180559227-180559441) | |
| 573-787, gnl|monDom2|scaffold_13 (34521738-34521985) | |
| 573-787, gnl|monDom2|scaffold_13 (34521962-34521747) | |
| 573-787, gnl|panTro1|chr1 (206703394-206703677) | |
| 573-787, gnl|panTro1|chr1 (206703633-206703418) | |
| 573-787, gnl|rheMac2|chr1 (143980395-143980112) | |
| 573-787, gnl|rheMac2|chr1 (143980156-143980371) | |
| 573-787, gnl|rn3|chr13 (96507878-96507611) | |
| 573-787, gnl|rn3|chr13 (96507653-96507868) | |
| 573-787, gnl|tetNig1|chr14 (4921899-4922129) | |
| 573-787, gnl|tetNig1|chr14 (4922120-4921905) | |
| 573-787, gnl|xenTro1|scaffold_215 (1298623-1298347) | |
| 573-787, gnl|xenTro1|scaffold_215 (1298383-1298598) |