Non-Coding RNA Search

Ss1.1-Pig4-TMW8064E22.3

Sequence:


               
               CCTCAGACTAGAGTGGGGCTGGGAGATTTGTTTTGGCTGTAGGCCTCCCAGAAGCTCATC
TTTAGACCCAGAAAGATCAGGAAGTATCACAGGCTGATTCAGGGTCCCCACTGTGATCAT
GGATAACTCACTTCACCTCTTGGTGCCTTGGTTTCTCCATCTGTAAAGTGGAGAGAAAGA
AGGCCAGCTTCTTTCCCTCCTGCTCAGGGATGCTGTGAGGACTCAGTCATTATTGCCTGT
AGTGAAGGCATCATCTAAGGACTAGTGGTGGCCTTGGGAAGTGGAACCCCAGGAAGACAG
TGTGTCTTCCGGGTGCCGGGGGGCCTGGAGGCCCCCAGGATGCACAGTATGGTGGGACGG
GGAGAAGGCTCACATAACTGTAGTTCTTACTTCACAGCACTGTGAACTCAGCACAATGGG
ACCCCGGTCAGGTGACGAGGGGTCACATGGCTCAGGCTGGCCACTCATAATTCCAAAACC
AAATGTCCTGATGTTAATTTTTTCTAAACTTTTGGAGAATATATAGAAGGATCAATTTGA
AAACTGATATTCATTGAGCTTTGGGCAGACAAGAGAGTGGGTGAATGGGGAGCATCTGGA
GATTGTTTTTAAGGTGGTCGAAAGCTCTTTAGGAACTGTCTCTCTCTTGTGTTCTTCCCT
ACAACAATCTTTTTCAACCTCTGAGGCTCATCTCATCAAATGGACTGGCCTTCTCTTTGC
TTCTCTGCAGAATACAGAAACAAAACTTTTGTGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCAGACTAGAGTGGGGCTGGGAGATTTGTTTTGGCTGTAGGCCTCCCAGAAGCTCATC
TTTAGACCCAGAAAGATCAGGAAGTATCACAGGCTGATTCAGGGTCCCCACTGTGATCAT
GGATAACTCACTTCACCTCTTGGTGCCTTGGTTTCTCCATCTGTAAAGTGGAGAGAAAGA
AGGCCAGCTTCTTTCCCTCCTGCTCAGGGATGCTGTGAGGACTCAGTCATTATTGCCTGT
AGTGAAGGCATCATCTAAGGACTAGTGGTGGCCTTGGGAAGTGGAACCCCAGGAAGACAG
TGTGTCTTCCGGGTGCCGGGGGGCCTGGAGGCCCCCAGGATGCACAGTATGGTGGGACGG
GGAGAAGGCTCACATAACTGTAGTTCTTACTTCACAGCACTGTGAACTCAGCACAATGGG
ACCCCGGTCAGGTGACGAGGGGTCACATGGCTCAGGCTGGCCACTCATAATTCCAAAACC
AAATGTCCTGATGTTAATTTTTTCTAAACTTTTGGAGAATATATAGAAGGATCAATTTGA
AAACTGATATTCATTGAGCTTTGGGCAGACAAGAGAGTGGGTGAATGGGGAGCATCTGGA
GATTGTTTTTAAGGTGGTCGAAAGCTCTTTAGGAACTGTCTCTCTCTTGTGTTCTTCCCT
ACAACAATCTTTTTCAACCTCTGAGGCTCATCTCATCAAATGGACTGGCCTTCTCTTTGC
TTCTCTGCAGAATACAGAAACAAAACTTTTGTGTTT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               81-197, - strand, RNAz p=0.68084
               

               
               99-202, - strand, RNAz p=0.924613
               

               
               294-476, - strand, RNAz p=0.992719

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-197, - strand, RNAz p=0.68084
               

               
               99-202, - strand, RNAz p=0.924613
               

               
               294-476, - strand, RNAz p=0.992719

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-756, gnl|bosTau2|chr8 (4394872-4394113)
               

               
               1-756, gnl|canFam2|chr25 (30015377-30014289)
               

               
               1-756, gnl|dasNov1|scaffold_7526 (19527-18569)
               

               
               1-756, gnl|echTel1|scaffold_289866 (73183-74284)
               

               
               1-756, gnl|hg17|chr8 (10785411-10786505)
               

               
               1-756, gnl|Hg17|chr8 (10786318-10785547)
               

               
               1-756, gnl|loxAfr1|scaffold_1078 (74035-75149)
               

               
               1-756, gnl|mm7|chr14 (58690546-58689535)
               

               
               1-756, gnl|Mm7|chr14 (58689694-58690400)
               

               
               1-756, gnl|monDom2|scaffold_1 (70936726-70937940)
               

               
               1-756, gnl|oryCun1|scaffold_211517 (221796-220724)
               

               
               1-756, gnl|panTro1|chr7 (11434952-11436045)
               

               
               1-756, gnl|rheMac2|chr8 (9848963-9847866)
               

               
               1-756, gnl|rn3|chr15 (43107677-43106655)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-756, gnl|bosTau2|chr8 (4394872-4394113)
               

               
               1-756, gnl|canFam2|chr25 (30015377-30014289)
               

               
               1-756, gnl|dasNov1|scaffold_7526 (19527-18569)
               

               
               1-756, gnl|echTel1|scaffold_289866 (73183-74284)
               

               
               1-756, gnl|hg17|chr8 (10785411-10786505)
               

               
               1-756, gnl|Hg17|chr8 (10786318-10785547)
               

               
               1-756, gnl|loxAfr1|scaffold_1078 (74035-75149)
               

               
               1-756, gnl|mm7|chr14 (58690546-58689535)
               

               
               1-756, gnl|Mm7|chr14 (58689694-58690400)
               

               
               1-756, gnl|monDom2|scaffold_1 (70936726-70937940)
               

               
               1-756, gnl|oryCun1|scaffold_211517 (221796-220724)
               

               
               1-756, gnl|panTro1|chr7 (11434952-11436045)
               

               
               1-756, gnl|rheMac2|chr8 (9848963-9847866)
               

               
               1-756, gnl|rn3|chr15 (43107677-43106655)

	81-197, - strand, RNAz p=0.68084
	99-202, - strand, RNAz p=0.924613
	294-476, - strand, RNAz p=0.992719

	1-756, gnl\|bosTau2\|chr8 (4394872-4394113)
	1-756, gnl\|canFam2\|chr25 (30015377-30014289)
	1-756, gnl\|dasNov1\|scaffold_7526 (19527-18569)
	1-756, gnl\|echTel1\|scaffold_289866 (73183-74284)
	1-756, gnl\|hg17\|chr8 (10785411-10786505)
	1-756, gnl\|Hg17\|chr8 (10786318-10785547)
	1-756, gnl\|loxAfr1\|scaffold_1078 (74035-75149)
	1-756, gnl\|mm7\|chr14 (58690546-58689535)
	1-756, gnl\|Mm7\|chr14 (58689694-58690400)
	1-756, gnl\|monDom2\|scaffold_1 (70936726-70937940)
	1-756, gnl\|oryCun1\|scaffold_211517 (221796-220724)
	1-756, gnl\|panTro1\|chr7 (11434952-11436045)
	1-756, gnl\|rheMac2\|chr8 (9848963-9847866)
	1-756, gnl\|rn3\|chr15 (43107677-43106655)