Non-Coding RNA Search

Ss1.1-Pig4-TMW8064G19.5

Sequence:


               
               GTGTTGGAACACAAAGTTTACTAAAATTGAGATGTGTCCAGGAGATACACAGTGTTAACA
GCTCATTATCAAAAGGTCACGAAATTTAATAGCCAATGTAAGGTACTTTTGTGAGATTTA
GGGAAGATTTCTTGAATGTATTACTGTCAGGCTCTGAGGAAATTAAATGCACATTGACTT
TTTAAACTATGAATTGAACTCCTCAGTTTAATACAATTTGTGTTTTTGTTAACTAGCAGC
AGAATTTCAGCATTTGCTACTTACTGGTAGAGAAGAAAAATCCCACAGCCCTGCCAGTAC
AGGTTAGTTTAATCTGTAAGTACCTGATATTCCTATTTTTTTCAAACATATCCATATAAC
CCACACAAGGAAGAAAGCTGTGCAGTTACTTAAATGTGAGTATAACTAATAATAGATCCA
TTGGACACTTTCAGACACTTAGTACTTGGGCCAAAGTAGCTTTAGGTTTGCTCACCTTAG
TTATAATAAAGGTAGTATTATGCTCCTTTATTACCTGGTTATGGTTGAACCTAAATAGAT
ACATAGAAGGAAAAGAAAGTGAAAGTTTCGATTGGCTAAATGCTCATGTTGGTATATGGA
GTGCAGGGTTTTGGGTTTAGGGTCTCTTAAGCCACTCCTGTGGTGGTACCTTTTAACTTT
TTACAGTATGAATCAATCTAGGACAAAAGTCAAGTTTCCTCACCTCTAGTAGTGATAAAT
GGTATGCAGTCAGAAGCTATAAAATACTTTTATACTGCTTTTTTGTTCTTAAATGTTTTA
GTAACTCCTGCTGTAAATAAGTACTAATTTTGTTCATCTTTATAAACTATAATCTGTTCT
GTTGATGCACTACCATGGTGGGTTCATTTTACTTTGAATTAAGAATAACTTTTTAAATAT
TCAAATGAAAGCTGGCTACCCATGAAGAAATCTAGATAGGTTCTTTGTGTATTCCTTTTG
AGGAACAGTGAGGACGCAACAGGTGTTATGTTGAAGTTTTTATTTCCATTGATTCTACCA
GAATTCATTGTTGTATTGAACCATCCTTGAGTGATTTCCTTTAACCTTTATATATTGTGC
TCTAATGTTGATAACAAATTTAAATAATGAGGAGAGAGAAAGTTTGTGCAAGCCTGGACC
ATTTTTCCAATCTGTATGGCCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTGGAACACAAAGTTTACTAAAATTGAGATGTGTCCAGGAGATACACAGTGTTAACA
GCTCATTATCAAAAGGTCACGAAATTTAATAGCCAATGTAAGGTACTTTTGTGAGATTTA
GGGAAGATTTCTTGAATGTATTACTGTCAGGCTCTGAGGAAATTAAATGCACATTGACTT
TTTAAACTATGAATTGAACTCCTCAGTTTAATACAATTTGTGTTTTTGTTAACTAGCAGC
AGAATTTCAGCATTTGCTACTTACTGGTAGAGAAGAAAAATCCCACAGCCCTGCCAGTAC
AGGTTAGTTTAATCTGTAAGTACCTGATATTCCTATTTTTTTCAAACATATCCATATAAC
CCACACAAGGAAGAAAGCTGTGCAGTTACTTAAATGTGAGTATAACTAATAATAGATCCA
TTGGACACTTTCAGACACTTAGTACTTGGGCCAAAGTAGCTTTAGGTTTGCTCACCTTAG
TTATAATAAAGGTAGTATTATGCTCCTTTATTACCTGGTTATGGTTGAACCTAAATAGAT
ACATAGAAGGAAAAGAAAGTGAAAGTTTCGATTGGCTAAATGCTCATGTTGGTATATGGA
GTGCAGGGTTTTGGGTTTAGGGTCTCTTAAGCCACTCCTGTGGTGGTACCTTTTAACTTT
TTACAGTATGAATCAATCTAGGACAAAAGTCAAGTTTCCTCACCTCTAGTAGTGATAAAT
GGTATGCAGTCAGAAGCTATAAAATACTTTTATACTGCTTTTTTGTTCTTAAATGTTTTA
GTAACTCCTGCTGTAAATAAGTACTAATTTTGTTCATCTTTATAAACTATAATCTGTTCT
GTTGATGCACTACCATGGTGGGTTCATTTTACTTTGAATTAAGAATAACTTTTTAAATAT
TCAAATGAAAGCTGGCTACCCATGAAGAAATCTAGATAGGTTCTTTGTGTATTCCTTTTG
AGGAACAGTGAGGACGCAACAGGTGTTATGTTGAAGTTTTTATTTCCATTGATTCTACCA
GAATTCATTGTTGTATTGAACCATCCTTGAGTGATTTCCTTTAACCTTTATATATTGTGC
TCTAATGTTGATAACAAATTTAAATAATGAGGAGAGAGAAAGTTTGTGCAAGCCTGGACC
ATTTTTCCAATCTGTATGGCCGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               249-368, - strand, RNAz p=0.531633

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-368, - strand, RNAz p=0.531633

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               15-1122, gnl|bosTau2|chr19 (12523608-12524718)
               

               
               15-1122, gnl|Hg17|chr17 (27728831-27729950)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1122, gnl|bosTau2|chr19 (12523608-12524718)
               

               
               15-1122, gnl|Hg17|chr17 (27728831-27729950)

	15-1122, gnl\|bosTau2\|chr19 (12523608-12524718)
	15-1122, gnl\|Hg17\|chr17 (27728831-27729950)