Non-Coding RNA Search

Ss1.1-Pig4-TMW8064J13.3

Sequence:


               
               GCAAGACAGAGGCCAGCCCAAGGTCTCAGTTTGACATCTGTTTAAAACAAATGTCATTAC
CCAGCATCCTGCTGGTTTAAACCTGCCTGTTTTCTATGGCTAAACTGAAGGAGGTAATGT
GTTTGTTAACTTGGTTTTCATTTGGGGTGACTTGTTCTAAAAGAGAAAAAAGGCCCTGGA
AGGTTTGGGGTGAGGTCTGGGGATGCTTATCAGGCAAAGGGTAGGCTGGTATTTTTTCTA
ATCCATCCTCACTTCCTGCCCCTTTGATCTGATTGGCACCCCCTTTCTCTCCACCAGCTA
TTCACAGACCTGGGTAGAAAATCCATTTGTGCCAAATTATGTAGCATTTTTTAGTTTTGG
TTTGGTTTTGGTTTGTTTTTGGGCTTTTTTTTTCTATGTAAGGAATAACTTGTCCGATAG
GGTTAGGATGAGACCACCAAACTCATTTTCACTTGTATCTTAACAGGCATTGAATCCAGC
TCTCCAGAGGTGAAAGGCTATTGGGGTAATGATTAAAAAAAAAATCTGTAGTATTCTACT
GTTATATTAATAAACTGGTGGGAGTCTTGTTTCACTGCCCATGACATACTAGCAAAACAT
GCACATGGCAGAAAGGAGCTGAGAGAGCAAAGCAGGGGTGGGCCTTCTGCCCCTGAGGGT
CCCTTGATGGATCTGGCCTACCCCCCCTGTAAAAATATTGAGTTTAGCAGCCATATCTAA
CAGCAGGGCCAGACTTGAGAGGTAGCCAGCTGGCCTGGTCTAGTCCAGGTATGGGTGTTT
GCTGATGGGATTTTTTTTCTTTTTCTTTGGAAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAGACAGAGGCCAGCCCAAGGTCTCAGTTTGACATCTGTTTAAAACAAATGTCATTAC
CCAGCATCCTGCTGGTTTAAACCTGCCTGTTTTCTATGGCTAAACTGAAGGAGGTAATGT
GTTTGTTAACTTGGTTTTCATTTGGGGTGACTTGTTCTAAAAGAGAAAAAAGGCCCTGGA
AGGTTTGGGGTGAGGTCTGGGGATGCTTATCAGGCAAAGGGTAGGCTGGTATTTTTTCTA
ATCCATCCTCACTTCCTGCCCCTTTGATCTGATTGGCACCCCCTTTCTCTCCACCAGCTA
TTCACAGACCTGGGTAGAAAATCCATTTGTGCCAAATTATGTAGCATTTTTTAGTTTTGG
TTTGGTTTTGGTTTGTTTTTGGGCTTTTTTTTTCTATGTAAGGAATAACTTGTCCGATAG
GGTTAGGATGAGACCACCAAACTCATTTTCACTTGTATCTTAACAGGCATTGAATCCAGC
TCTCCAGAGGTGAAAGGCTATTGGGGTAATGATTAAAAAAAAAATCTGTAGTATTCTACT
GTTATATTAATAAACTGGTGGGAGTCTTGTTTCACTGCCCATGACATACTAGCAAAACAT
GCACATGGCAGAAAGGAGCTGAGAGAGCAAAGCAGGGGTGGGCCTTCTGCCCCTGAGGGT
CCCTTGATGGATCTGGCCTACCCCCCCTGTAAAAATATTGAGTTTAGCAGCCATATCTAA
CAGCAGGGCCAGACTTGAGAGGTAGCCAGCTGGCCTGGTCTAGTCCAGGTATGGGTGTTT
GCTGATGGGATTTTTTTTCTTTTTCTTTGGAAAACA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-118, - strand, RNAz p=0.557813
               

               
               192-310, + strand, RNAz p=0.999574

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-118, - strand, RNAz p=0.557813
               

               
               192-310, + strand, RNAz p=0.999574

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               172-286, - strand, RNAmicro p=0.929958

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               172-286, - strand, RNAmicro p=0.929958

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               192-307, DA182601 BRAMY2 Homo sapiens cDNA clone BRAMY2047856 5', mRNA 
(dbj|DA182601.1|), blast E-value=1e-19, identity=87.07% 
               

               
               192-307, DA833018 PLACE1 Homo sapiens cDNA clone PLACE1010305 5', mRNA 
(dbj|DA833018.1|), blast E-value=1e-19, identity=87.07% 
               

               
               192-307, DB356308 HEMBA1 Homo sapiens cDNA clone HEMBA1003201 3', mRNA 
(dbj|DB356308.1|), blast E-value=1e-19, identity=87.07% 
               

               
               192-304, fp592.z1 fp 73-75d fetal sheep skin library Ovis aries cDNA, mRNA 
(gb|CF117489.1|), blast E-value=2e-34, identity=92.92% 
               

               
               236-308, DR010009B20E03 Canine normalized retinal cDNA library Canis 
(gb|DT538240.1|), blast E-value=3e-20, identity=94.52% 
               

               
               196-304, Hw_loin_70_050829_C08 Bos taurus CF-24-HW loin cDNA library Bos 
(gb|DV791606.1|), blast E-value=9e-30, identity=91.74%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               192-307, DA182601 BRAMY2 Homo sapiens cDNA clone BRAMY2047856 5', mRNA 
(dbj|DA182601.1|), blast E-value=1e-19, identity=87.07% 
               

               
               192-307, DA833018 PLACE1 Homo sapiens cDNA clone PLACE1010305 5', mRNA 
(dbj|DA833018.1|), blast E-value=1e-19, identity=87.07% 
               

               
               192-307, DB356308 HEMBA1 Homo sapiens cDNA clone HEMBA1003201 3', mRNA 
(dbj|DB356308.1|), blast E-value=1e-19, identity=87.07% 
               

               
               192-304, fp592.z1 fp 73-75d fetal sheep skin library Ovis aries cDNA, mRNA 
(gb|CF117489.1|), blast E-value=2e-34, identity=92.92% 
               

               
               236-308, DR010009B20E03 Canine normalized retinal cDNA library Canis 
(gb|DT538240.1|), blast E-value=3e-20, identity=94.52% 
               

               
               196-304, Hw_loin_70_050829_C08 Bos taurus CF-24-HW loin cDNA library Bos 
(gb|DV791606.1|), blast E-value=9e-30, identity=91.74%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-770, gnl|bosTau2|chr5 (18979869-18979120)
               

               
               2-770, gnl|Hg17|chr12 (52147384-52148157)
               

               
               2-770, gnl|Mm7|chr15 (102474473-102475226)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-770, gnl|bosTau2|chr5 (18979869-18979120)
               

               
               2-770, gnl|Hg17|chr12 (52147384-52148157)
               

               
               2-770, gnl|Mm7|chr15 (102474473-102475226)

	2-118, - strand, RNAz p=0.557813
	192-310, + strand, RNAz p=0.999574

	192-307, DA182601 BRAMY2 Homo sapiens cDNA clone BRAMY2047856 5', mRNA (dbj\|DA182601.1\|), blast E-value=1e-19, identity=87.07%
	192-307, DA833018 PLACE1 Homo sapiens cDNA clone PLACE1010305 5', mRNA (dbj\|DA833018.1\|), blast E-value=1e-19, identity=87.07%
	192-307, DB356308 HEMBA1 Homo sapiens cDNA clone HEMBA1003201 3', mRNA (dbj\|DB356308.1\|), blast E-value=1e-19, identity=87.07%
	192-304, fp592.z1 fp 73-75d fetal sheep skin library Ovis aries cDNA, mRNA (gb\|CF117489.1\|), blast E-value=2e-34, identity=92.92%
	236-308, DR010009B20E03 Canine normalized retinal cDNA library Canis (gb\|DT538240.1\|), blast E-value=3e-20, identity=94.52%
	196-304, Hw_loin_70_050829_C08 Bos taurus CF-24-HW loin cDNA library Bos (gb\|DV791606.1\|), blast E-value=9e-30, identity=91.74%

	2-770, gnl\|bosTau2\|chr5 (18979869-18979120)
	2-770, gnl\|Hg17\|chr12 (52147384-52148157)
	2-770, gnl\|Mm7\|chr15 (102474473-102475226)