Non-Coding RNA Search

Ss1.1-Pig4-TMW8065B10.3

Sequence:


               
               CTGCCTTTGCAGTTGATTATTCCTCCCCTTTTCCTCAGCTTAAAGCATCTATGTCCAGTG
TCTGTGAAATGATGTTTTATCTGTGTCTCAGGATAAGAAACAGCAATCATTCCACCAGGT
GCTGGAAACTGGTTAGCCCTGAAGCAAGGGTTTCTAGGGCCACAGCTCAGGGATGTGTAT
TTAATTACAGGGTCCCCGGAAACCCCTCTCTTGGCTACCACAAGCAACGGCCTCTTTTCT
GGGCTTGGGAGCCAGACATGGACTGTTTCCTCAGAGGCAGGGCCCCACATAGCATGGTGG
GGCTTCTTCTTTGGCTGGAGCTGGGCTCCTTTGAGACTTGAAGACTTCTGGCTGTCCTGC
ACCATGAGCCACAGTGGCCCTGCCTCTGCCAACTCAGAAGATGCCTGGTCCCTCTGCCCA
ATCCGTTCCCCATCTGGCCTCTCTCCTCTGGGCCTGCAGCCCTAAATGGGCCACAACCTG
CTTAGGACTCAGTTGCAGGCTCAAAGGGAAGCTGTGAATCAGGCCAGAGTTTGCTTCAAG
CCCAAGAAAAAAGTTGTCTTACTGGTGGAGGCTGGTCTTCCATATCCTGGAGCCAGCCCT
GCCAGCCAAAGGATCGTTTTTTTGCCCTTTGGTAACCATTGTTTTCTTTCTCTTATAATA
GGTGATAATGTTGTTGAATCAAATTTCCCTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCTTTGCAGTTGATTATTCCTCCCCTTTTCCTCAGCTTAAAGCATCTATGTCCAGTG
TCTGTGAAATGATGTTTTATCTGTGTCTCAGGATAAGAAACAGCAATCATTCCACCAGGT
GCTGGAAACTGGTTAGCCCTGAAGCAAGGGTTTCTAGGGCCACAGCTCAGGGATGTGTAT
TTAATTACAGGGTCCCCGGAAACCCCTCTCTTGGCTACCACAAGCAACGGCCTCTTTTCT
GGGCTTGGGAGCCAGACATGGACTGTTTCCTCAGAGGCAGGGCCCCACATAGCATGGTGG
GGCTTCTTCTTTGGCTGGAGCTGGGCTCCTTTGAGACTTGAAGACTTCTGGCTGTCCTGC
ACCATGAGCCACAGTGGCCCTGCCTCTGCCAACTCAGAAGATGCCTGGTCCCTCTGCCCA
ATCCGTTCCCCATCTGGCCTCTCTCCTCTGGGCCTGCAGCCCTAAATGGGCCACAACCTG
CTTAGGACTCAGTTGCAGGCTCAAAGGGAAGCTGTGAATCAGGCCAGAGTTTGCTTCAAG
CCCAAGAAAAAAGTTGTCTTACTGGTGGAGGCTGGTCTTCCATATCCTGGAGCCAGCCCT
GCCAGCCAAAGGATCGTTTTTTTGCCCTTTGGTAACCATTGTTTTCTTTCTCTTATAATA
GGTGATAATGTTGTTGAATCAAATTTCCCTGAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-653, - strand, RNAz p=0.995425

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-653, - strand, RNAz p=0.995425

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               430-547, + strand, RNAmicro p=0.998816
               

               
               44-116, - strand, RNAmicro p=0.93968
               

               
               38-142, + strand, RNAmicro p=0.938859

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               430-547, + strand, RNAmicro p=0.998816
               

               
               44-116, - strand, RNAmicro p=0.93968
               

               
               38-142, + strand, RNAmicro p=0.938859

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               45-653, 965930 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK778759.1|), 
blast E-value=0, identity=88.58% 
               

               
               45-653, BE030011B11A05 BE03 Normalized and Subtracted bovine embryonic and 
(gb|CN435142.1|), blast E-value=0, identity=88.74% 
               

               
               68-653, BE04013A1E08 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN437572.1|), blast E-value=0, identity=87.97% 
               

               
               45-653, 1266650 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN523184.1|), 
blast E-value=0, identity=88.74% 
               

               
               45-653, 1270586 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN525909.1|), 
blast E-value=0, identity=88.74% 
               

               
               45-653, 1392683 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN543803.1|), 
blast E-value=0, identity=88.74%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               45-653, 965930 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb|CK778759.1|), 
blast E-value=0, identity=88.58% 
               

               
               45-653, BE030011B11A05 BE03 Normalized and Subtracted bovine embryonic and 
(gb|CN435142.1|), blast E-value=0, identity=88.74% 
               

               
               68-653, BE04013A1E08 BE04 Normalized and Subtracted bovine embryonic and 
(gb|CN437572.1|), blast E-value=0, identity=87.97% 
               

               
               45-653, 1266650 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN523184.1|), 
blast E-value=0, identity=88.74% 
               

               
               45-653, 1270586 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN525909.1|), 
blast E-value=0, identity=88.74% 
               

               
               45-653, 1392683 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN543803.1|), 
blast E-value=0, identity=88.74%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr11 (72845584-72844885)
               

               
               1-696, gnl|Hg17|chr9 (124360495-124359802)
               

               
               1-696, gnl|Mm7|chr2 (38731918-38731324)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr11 (72845584-72844885)
               

               
               1-696, gnl|Hg17|chr9 (124360495-124359802)
               

               
               1-696, gnl|Mm7|chr2 (38731918-38731324)

	430-547, + strand, RNAmicro p=0.998816
	44-116, - strand, RNAmicro p=0.93968
	38-142, + strand, RNAmicro p=0.938859

	45-653, 965930 MARC 3BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK778759.1\|), blast E-value=0, identity=88.58%
	45-653, BE030011B11A05 BE03 Normalized and Subtracted bovine embryonic and (gb\|CN435142.1\|), blast E-value=0, identity=88.74%
	68-653, BE04013A1E08 BE04 Normalized and Subtracted bovine embryonic and (gb\|CN437572.1\|), blast E-value=0, identity=87.97%
	45-653, 1266650 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN523184.1\|), blast E-value=0, identity=88.74%
	45-653, 1270586 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN525909.1\|), blast E-value=0, identity=88.74%
	45-653, 1392683 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN543803.1\|), blast E-value=0, identity=88.74%

	1-696, gnl\|bosTau2\|chr11 (72845584-72844885)
	1-696, gnl\|Hg17\|chr9 (124360495-124359802)
	1-696, gnl\|Mm7\|chr2 (38731918-38731324)