Ss1.1-Pig4-TMW8065J05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGATGGATCACCCAGTATACTCCCTACCAGCCAGAGGTGTCTCAGGGAAGACTGGAGAGT TTACTCAATTACCAGACCATGGTGTGTGACATCACAGGCATGGACACGGCTAACGCATCC CTGCTGGATGAGGGCACCGCAGCTGCAGAGGCAATGCAGCTTTGCCACAGACACAACAAG AGGAGAAAATTTTTTGTTGACCCTCGCTGCCACCCACAGACGATAGCTGTCATCCAGACT CGAGCCAAGTATGCTGGGGTCCTCATTGAACTGAAGTTACCCCATGAAATGGACTTCAGT GGAAAAGATGTCAGTGGAGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAAGAC TTTACAGAACTCGTGGAGAGAGCCCACCAGGCTGGGAGCTTGGCCTGCTGTGCTACGGAC CTTTTAGCTCTGTGTATCTTGAAGCCTCCTGGAGAATTTGGGGTAGACATCGCCTTGGGA AGCTCACAGAGATTTGGTGTGCCACTGGGATATGGCGGACCACATGCGGCCTTTTTTGCT GTCCGGGAAAGCTTGGTGAGGATGATGCCTGGAAGAATGGTGGGGGTGACAAGAGATGCC AGTGGGAAAGAAGTGTATCGCCTTGCTCTTCAAACCAGAGAGCAACACATCCGGAGAGAC AAGGCCACCAGCAACATCTGTACAGCTCAGGCTCTCTTGGCAAATATGGCTGCAATGTTT GCAATCTACCATGGGTCACATGGGCTGGAACATATTGCTAGGAGGGTACATAATGCCACT TTGATTTTGTCTGAAGGTCTCAAGCGAGCTGGGCACCAACTCCAGCACAACTTGTTCTTT GACACTTTGAAGATTCACTGTGGCTGCTCAGTGAAGGAGGTCTTGGGCAGGGCTGCTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGATGGATCACCCAGTATACTCCCTACCAGCCAGAGGTGTCTCAGGGAAGACTGGAGAGT TTACTCAATTACCAGACCATGGTGTGTGACATCACAGGCATGGACACGGCTAACGCATCC CTGCTGGATGAGGGCACCGCAGCTGCAGAGGCAATGCAGCTTTGCCACAGACACAACAAG AGGAGAAAATTTTTTGTTGACCCTCGCTGCCACCCACAGACGATAGCTGTCATCCAGACT CGAGCCAAGTATGCTGGGGTCCTCATTGAACTGAAGTTACCCCATGAAATGGACTTCAGT GGAAAAGATGTCAGTGGAGTGCTGTTCCAGTACCCAGACACTGAGGGGAAGGTGGAAGAC TTTACAGAACTCGTGGAGAGAGCCCACCAGGCTGGGAGCTTGGCCTGCTGTGCTACGGAC CTTTTAGCTCTGTGTATCTTGAAGCCTCCTGGAGAATTTGGGGTAGACATCGCCTTGGGA AGCTCACAGAGATTTGGTGTGCCACTGGGATATGGCGGACCACATGCGGCCTTTTTTGCT GTCCGGGAAAGCTTGGTGAGGATGATGCCTGGAAGAATGGTGGGGGTGACAAGAGATGCC AGTGGGAAAGAAGTGTATCGCCTTGCTCTTCAAACCAGAGAGCAACACATCCGGAGAGAC AAGGCCACCAGCAACATCTGTACAGCTCAGGCTCTCTTGGCAAATATGGCTGCAATGTTT GCAATCTACCATGGGTCACATGGGCTGGAACATATTGCTAGGAGGGTACATAATGCCACT TTGATTTTGTCTGAAGGTCTCAAGCGAGCTGGGCACCAACTCCAGCACAACTTGTTCTTT GACACTTTGAAGATTCACTGTGGCTGCTCAGTGAAGGAGGTCTTGGGCAGGGCTGCTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 475-616, - strand, RNAz p=0.795712 | |
| 689-798, + strand, RNAz p=0.666657 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 475-616, - strand, RNAz p=0.795712 | |
| 689-798, + strand, RNAz p=0.666657 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 5-170, gnl|bosTau2|chr8 (19024114-19024279) | |
| 5-170, gnl|canFam2|chr11 (30574618-30574453) | |
| 5-170, gnl|canFam2|chr11 (30574447-30574650) | |
| 5-170, gnl|danRer3|chr5 (72627137-72627299) | |
| 5-170, gnl|danRer3|chr5 (72627305-72627119) | |
| 5-170, gnl|dasNov1|scaffold_255321 (617-456) | |
| 5-170, gnl|dasNov1|scaffold_255321 (446-653) | |
| 5-170, gnl|echTel1|scaffold_277209 (3338-3175) | |
| 5-170, gnl|echTel1|scaffold_277209 (3169-3371) | |
| 5-170, gnl|fr1|chrUn (213450451-213450616) | |
| 5-170, gnl|fr1|chrUn (213450622-213450415) | |
| 5-170, gnl|galGal2|chrZ (12158018-12157853) | |
| 5-170, gnl|galGal2|chrZ (12157851-12158028) | |
| 5-170, gnl|hg17|chr4 (57300222-57300386) | |
| 5-170, gnl|hg17|chr9 (6600187-6600390) | |
| 5-170, gnl|Hg17|chr9 (6600357-6600192) | |
| 5-170, gnl|mm7|chr19 (29850733-29850568) | |
| 5-170, gnl|mm7|chr19 (29850562-29850763) | |
| 5-170, gnl|Mm7|chr19 (29850732-29850567) | |
| 5-170, gnl|monDom2|scaffold_5 (110001799-110001964) | |
| 5-170, gnl|monDom2|scaffold_5 (110001968-110001766) | |
| 5-170, gnl|oryCun1|scaffold_211620 (499-338) | |
| 5-170, gnl|oryCun1|scaffold_211620 (329-533) | |
| 5-170, gnl|panTro1|chr11 (6525229-6525432) | |
| 5-170, gnl|panTro1|chr3 (89328641-89328476) | |
| 5-170, gnl|rheMac2|chr15 (70542734-70542899) | |
| 5-170, gnl|rheMac2|chr15 (70542905-70542700) | |
| 5-170, gnl|rn3|chr1 (234063695-234063536) | |
| 5-170, gnl|rn3|chr1 (234063524-234063729) | |
| 5-170, gnl|tetNig1|chr12 (5215080-5215245) | |
| 5-170, gnl|tetNig1|chr12 (5215251-5215058) | |
| 5-170, gnl|xenTro1|scaffold_52 (1741826-1741991) | |
| 5-170, gnl|xenTro1|scaffold_52 (1741997-1741811) | |
| 396-616, gnl|bosTau2|chr8 (19029132-19029352) | |
| 689-798, gnl|bosTau2|chr8 (19033978-19034087) | |
| 689-798, gnl|canFam2|chr11 (30558914-30559061) | |
| 689-798, gnl|danRer3|chr5 (72633259-72633133) | |
| 689-798, gnl|dasNov1|scaffold_25079 (5995-6144) | |
| 689-798, gnl|fr1|chrUn (213451831-213451695) | |
| 689-798, gnl|galGal2|chrZ (12152904-12153034) | |
| 689-798, gnl|hg17|chr9 (6585000-6585146) | |
| 689-798, gnl|Hg17|chr9 (6585121-6585012) | |
| 689-798, gnl|loxAfr1|scaffold_24989 (23000-23133) | |
| 689-798, gnl|mm7|chr19 (29838406-29838554) | |
| 689-798, gnl|Mm7|chr19 (29838527-29838418) | |
| 689-798, gnl|monDom2|scaffold_5 (110014974-110014836) | |
| 689-798, gnl|panTro1|chr11 (6510040-6510186) | |
| 689-798, gnl|rheMac2|chr15 (70557893-70557735) | |
| 689-798, gnl|rn3|chr1 (234050959-234051107) | |
| 689-798, gnl|tetNig1|chr12 (5216437-5216323) | |
| 689-798, gnl|xenTro1|scaffold_52 (1744286-1744155) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-170, gnl|bosTau2|chr8 (19024114-19024279) | |
| 5-170, gnl|canFam2|chr11 (30574618-30574453) | |
| 5-170, gnl|canFam2|chr11 (30574447-30574650) | |
| 5-170, gnl|danRer3|chr5 (72627137-72627299) | |
| 5-170, gnl|danRer3|chr5 (72627305-72627119) | |
| 5-170, gnl|dasNov1|scaffold_255321 (617-456) | |
| 5-170, gnl|dasNov1|scaffold_255321 (446-653) | |
| 5-170, gnl|echTel1|scaffold_277209 (3338-3175) | |
| 5-170, gnl|echTel1|scaffold_277209 (3169-3371) | |
| 5-170, gnl|fr1|chrUn (213450451-213450616) | |
| 5-170, gnl|fr1|chrUn (213450622-213450415) | |
| 5-170, gnl|galGal2|chrZ (12158018-12157853) | |
| 5-170, gnl|galGal2|chrZ (12157851-12158028) | |
| 5-170, gnl|hg17|chr4 (57300222-57300386) | |
| 5-170, gnl|hg17|chr9 (6600187-6600390) | |
| 5-170, gnl|Hg17|chr9 (6600357-6600192) | |
| 5-170, gnl|mm7|chr19 (29850733-29850568) | |
| 5-170, gnl|mm7|chr19 (29850562-29850763) | |
| 5-170, gnl|Mm7|chr19 (29850732-29850567) | |
| 5-170, gnl|monDom2|scaffold_5 (110001799-110001964) | |
| 5-170, gnl|monDom2|scaffold_5 (110001968-110001766) | |
| 5-170, gnl|oryCun1|scaffold_211620 (499-338) | |
| 5-170, gnl|oryCun1|scaffold_211620 (329-533) | |
| 5-170, gnl|panTro1|chr11 (6525229-6525432) | |
| 5-170, gnl|panTro1|chr3 (89328641-89328476) | |
| 5-170, gnl|rheMac2|chr15 (70542734-70542899) | |
| 5-170, gnl|rheMac2|chr15 (70542905-70542700) | |
| 5-170, gnl|rn3|chr1 (234063695-234063536) | |
| 5-170, gnl|rn3|chr1 (234063524-234063729) | |
| 5-170, gnl|tetNig1|chr12 (5215080-5215245) | |
| 5-170, gnl|tetNig1|chr12 (5215251-5215058) | |
| 5-170, gnl|xenTro1|scaffold_52 (1741826-1741991) | |
| 5-170, gnl|xenTro1|scaffold_52 (1741997-1741811) | |
| 396-616, gnl|bosTau2|chr8 (19029132-19029352) | |
| 689-798, gnl|bosTau2|chr8 (19033978-19034087) | |
| 689-798, gnl|canFam2|chr11 (30558914-30559061) | |
| 689-798, gnl|danRer3|chr5 (72633259-72633133) | |
| 689-798, gnl|dasNov1|scaffold_25079 (5995-6144) | |
| 689-798, gnl|fr1|chrUn (213451831-213451695) | |
| 689-798, gnl|galGal2|chrZ (12152904-12153034) | |
| 689-798, gnl|hg17|chr9 (6585000-6585146) | |
| 689-798, gnl|Hg17|chr9 (6585121-6585012) | |
| 689-798, gnl|loxAfr1|scaffold_24989 (23000-23133) | |
| 689-798, gnl|mm7|chr19 (29838406-29838554) | |
| 689-798, gnl|Mm7|chr19 (29838527-29838418) | |
| 689-798, gnl|monDom2|scaffold_5 (110014974-110014836) | |
| 689-798, gnl|panTro1|chr11 (6510040-6510186) | |
| 689-798, gnl|rheMac2|chr15 (70557893-70557735) | |
| 689-798, gnl|rn3|chr1 (234050959-234051107) | |
| 689-798, gnl|tetNig1|chr12 (5216437-5216323) | |
| 689-798, gnl|xenTro1|scaffold_52 (1744286-1744155) |