Non-Coding RNA Search

Ss1.1-Pig4-TMW8065O16.3

Sequence:


               
               GCTGGATGGGCGGGACCTGCGCACCCTCGACCCCTCCTGGCTGCGCGGCCAGGTCATCGG
CTTCATCAGCCAGGAGCCGGTCCTGTTCGGAACAACCATCATGGAGAACATCCGTTTTGG
GAAGCTGGATGCCTCTGACGACGAGGTCTACGCAGCGGCCCGGGCAGCCAACGCGCACGA
GTTCATCACCAGCTTCCCTGAGGGCTACAGCACCATCGTGGGTGAGCGGGGTGCCACTTT
GTCTGGTGGCCAGAAGCAGCGCCTGGCCATCGCCCGAGCGCTCATCAAGCAGCCCACAGT
GCTGATCCTGGATGAGGCGACCAGCGCGCTGGACTCAGAGTCTGAGAGGGTGGTGCAGGA
GGCCCTGGACCGCGCCAGCGCCGGCCGCACTGTGCTGGTCATCGCCCACCGGCTCAGCAC
CGTGCGGGGGGCCCACCAGATCGTCGTCATGGCCCACGGCCAAGTCTGCGAGGTGGGGAC
CCACGAGGAGCTCCTGAGGAAAGGCGGGCTGTATTCGGAGCTCATCCGGAGACAGGCCCT
GGATGGCCCGGCTCCTGAGACGCCCAGAGGCCCCAGGAACCGGCACCCCAAGTCCTGAGA
GGTCTGGTCCCCGCCGAGCATCTGTGCCCAGGGCCAGGCTCAGCTTGGGGGAACCCCTGG
GGTGGGAGCCCCCAGGAGAGCCGGTCTCCTGGGGCGGGGGGCGGCTGCCTTGCTCCCCCG
CTCACAATAAAATCCGGGCCAGGACTGCTGGGCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGGATGGGCGGGACCTGCGCACCCTCGACCCCTCCTGGCTGCGCGGCCAGGTCATCGG
CTTCATCAGCCAGGAGCCGGTCCTGTTCGGAACAACCATCATGGAGAACATCCGTTTTGG
GAAGCTGGATGCCTCTGACGACGAGGTCTACGCAGCGGCCCGGGCAGCCAACGCGCACGA
GTTCATCACCAGCTTCCCTGAGGGCTACAGCACCATCGTGGGTGAGCGGGGTGCCACTTT
GTCTGGTGGCCAGAAGCAGCGCCTGGCCATCGCCCGAGCGCTCATCAAGCAGCCCACAGT
GCTGATCCTGGATGAGGCGACCAGCGCGCTGGACTCAGAGTCTGAGAGGGTGGTGCAGGA
GGCCCTGGACCGCGCCAGCGCCGGCCGCACTGTGCTGGTCATCGCCCACCGGCTCAGCAC
CGTGCGGGGGGCCCACCAGATCGTCGTCATGGCCCACGGCCAAGTCTGCGAGGTGGGGAC
CCACGAGGAGCTCCTGAGGAAAGGCGGGCTGTATTCGGAGCTCATCCGGAGACAGGCCCT
GGATGGCCCGGCTCCTGAGACGCCCAGAGGCCCCAGGAACCGGCACCCCAAGTCCTGAGA
GGTCTGGTCCCCGCCGAGCATCTGTGCCCAGGGCCAGGCTCAGCTTGGGGGAACCCCTGG
GGTGGGAGCCCCCAGGAGAGCCGGTCTCCTGGGGCGGGGGGCGGCTGCCTTGCTCCCCCG
CTCACAATAAAATCCGGGCCAGGACTGCTGGGCCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               300-419, + strand, RNAz p=0.77673

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               300-419, + strand, RNAz p=0.77673

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK126885, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK126885, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               221-474, gnl|bosTau2|chr4 (64550541-64550288)
               

               
               221-474, gnl|Hg17|chr7 (150178705-150178958)
               

               
               221-474, gnl|Mm7|chr5 (23449060-23449313)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               221-474, gnl|bosTau2|chr4 (64550541-64550288)
               

               
               221-474, gnl|Hg17|chr7 (150178705-150178958)
               

               
               221-474, gnl|Mm7|chr5 (23449060-23449313)

	221-474, gnl\|bosTau2\|chr4 (64550541-64550288)
	221-474, gnl\|Hg17\|chr7 (150178705-150178958)
	221-474, gnl\|Mm7\|chr5 (23449060-23449313)