Non-Coding RNA Search

Ss1.1-Pig4-TMW8066D24.3

Sequence:


               
               CCTGAAGGCTCTCCAGGACATGAGTTCCACAGCCCCCCCGGCCCCGGTGCAGCCGTCCAC
ACGTAAGGCCAAGACCATCCCCGTGCAGGCCTTCGAGGTGAAGCTGGATGTGACCCTGGG
CGACCTGACCAAGATCGGGAAGTCGCAGAAGTTCACGCTGAGCGTGGACGTGGAGGGCGG
CCGGCTGGTGCTGCTGCGGCGACAGCGGGACTCGCAGGAGGACTGGACAACCTTCACGCA
CGACCGCATCCGCCAGCTCATTAAGTCCCAGCGGGTCCAGAACAAGCTGGGGGTCGTGTT
TGAGAAGGAGAAGGAGCGGACGCAGCGCAAGGACTTCATCTTCGTCAGCGCCCGGAAGCG
GGAGGCCTTCTGCCAGCTGCTGCAGCTCATGAAGAACAAGCACTCCAAGCAGGACGAGCC
CGACATGATCTCCGTCTTCATAGGCACCTGGAACATGGGAAGTGTGCCGCCTCCGAGAAA
CGTGACGTCTTGGTTCACCTCGAAGGGTCTGGGGAAGACCCTGGATGAGGTCACAGTGAC
CATACCCCATGACATCTATGTTTTTGGGACCCAGGAGAACTCGGTGGGCGACCGCGAGTG
GCTGGACCTGCTCCGTGGGGGCCTGAAGGAGCTCACAGACCTGGATTACCGCCCGATTGC
CATGCAGTCGCTGTGGAACATCAAGGTGGCTGTGCTGGTCAAGCCGGAGCACGAGAACCG
CATCAGCCACGTCAGCACGTCCAGCGTGAAGACGGGCATCGCCAACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGAAGGCTCTCCAGGACATGAGTTCCACAGCCCCCCCGGCCCCGGTGCAGCCGTCCAC
ACGTAAGGCCAAGACCATCCCCGTGCAGGCCTTCGAGGTGAAGCTGGATGTGACCCTGGG
CGACCTGACCAAGATCGGGAAGTCGCAGAAGTTCACGCTGAGCGTGGACGTGGAGGGCGG
CCGGCTGGTGCTGCTGCGGCGACAGCGGGACTCGCAGGAGGACTGGACAACCTTCACGCA
CGACCGCATCCGCCAGCTCATTAAGTCCCAGCGGGTCCAGAACAAGCTGGGGGTCGTGTT
TGAGAAGGAGAAGGAGCGGACGCAGCGCAAGGACTTCATCTTCGTCAGCGCCCGGAAGCG
GGAGGCCTTCTGCCAGCTGCTGCAGCTCATGAAGAACAAGCACTCCAAGCAGGACGAGCC
CGACATGATCTCCGTCTTCATAGGCACCTGGAACATGGGAAGTGTGCCGCCTCCGAGAAA
CGTGACGTCTTGGTTCACCTCGAAGGGTCTGGGGAAGACCCTGGATGAGGTCACAGTGAC
CATACCCCATGACATCTATGTTTTTGGGACCCAGGAGAACTCGGTGGGCGACCGCGAGTG
GCTGGACCTGCTCCGTGGGGGCCTGAAGGAGCTCACAGACCTGGATTACCGCCCGATTGC
CATGCAGTCGCTGTGGAACATCAAGGTGGCTGTGCTGGTCAAGCCGGAGCACGAGAACCG
CATCAGCCACGTCAGCACGTCCAGCGTGAAGACGGGCATCGCCAACAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61862372|ref|XP_597839.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61862372|ref|XP_597839.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               458-576, + strand, RNAz p=0.562419

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               458-576, + strand, RNAz p=0.562419

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               89-256, gnl|bosTau2|chr15 (29848861-29848694)
               

               
               89-256, gnl|Hg17|chr11 (71618805-71618972)
               

               
               89-256, gnl|Mm7|chr7 (97877963-97877796)
               


               
               458-655, gnl|bosTau2|chr15 (29848028-29847831)
               

               
               458-655, gnl|Hg17|chr11 (71619684-71619881)
               

               
               458-655, gnl|Mm7|chr7 (97877118-97876921)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-256, gnl|bosTau2|chr15 (29848861-29848694)
               

               
               89-256, gnl|Hg17|chr11 (71618805-71618972)
               

               
               89-256, gnl|Mm7|chr7 (97877963-97877796)
               


               
               458-655, gnl|bosTau2|chr15 (29848028-29847831)
               

               
               458-655, gnl|Hg17|chr11 (71619684-71619881)
               

               
               458-655, gnl|Mm7|chr7 (97877118-97876921)

	89-256, gnl\|bosTau2\|chr15 (29848861-29848694)
	89-256, gnl\|Hg17\|chr11 (71618805-71618972)
	89-256, gnl\|Mm7\|chr7 (97877963-97877796)

	458-655, gnl\|bosTau2\|chr15 (29848028-29847831)
	458-655, gnl\|Hg17\|chr11 (71619684-71619881)
	458-655, gnl\|Mm7\|chr7 (97877118-97876921)