Non-Coding RNA Search

Ss1.1-Pig4-TMW8068M03.3

Sequence:


               
               GCATGTGCAACCTACTCTTTCTCCTTGGAAAGAAGAAAGGATGCACATAGGAGAGTGGGC
TCCCTGCCTTCCCTCTCCCCCATCCCCTTCTCTGTTATTTTTTTCTAACTTCATTTCCGA
GGCAGGCTCAGAATACCTGAGTCTGAAAAGATCAGGATAACACTCGTAAATTTGTGACAA
TCACTGCAGTATCCCATATCTGAGATTTTTTTTTTTTCTTTTAAATGCCATTTTTTCACT
AACACTATAGTGCATTAGAGCTGCAGAATCTTACAACTTCAGGGAAGAACAGAAATGTTT
GGCTTATCTTAAGATTCCTTTCCAAGGTCAAAACAAGAAATCCCCCTCCATAATCAAGAG
ACATGCATTTTAGTAACATCAGATGTATTCTTCTCTTTTCCCTTATCAAATAGTTGCTCT
TCCCACACTCTGAGTTTGCAGTCCAACCCTTTTTTCCCCCCTAGAATAGGGGGTAAGGGA
AGGTGATGAAATGTTGGAACAATTGAACATCCCTGTCCATTTTCTCCAAAAGCCTTTTGT
ATTCTAGCAGATCTGTGCAATCTTTTTTTTTTCACATGACACTGTAGGCCTAGGCCTGAA
ATAACTGGGGAGATGAGTATCAGAATTTCTCAGCAAGAACTAGACAAAACATATGTCTTC
TTTAGTATGAATTGAGCTGGGAATGGAGTGGGAGGGCTTGGAGGAAGGAAAAAGAAGGCA
CTGTATTTGAATAAATATGAGTAAATTTATTAGAAACTTTCCACAATCAGCTCCAAAAAA
TTATTTTTTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATGTGCAACCTACTCTTTCTCCTTGGAAAGAAGAAAGGATGCACATAGGAGAGTGGGC
TCCCTGCCTTCCCTCTCCCCCATCCCCTTCTCTGTTATTTTTTTCTAACTTCATTTCCGA
GGCAGGCTCAGAATACCTGAGTCTGAAAAGATCAGGATAACACTCGTAAATTTGTGACAA
TCACTGCAGTATCCCATATCTGAGATTTTTTTTTTTTCTTTTAAATGCCATTTTTTCACT
AACACTATAGTGCATTAGAGCTGCAGAATCTTACAACTTCAGGGAAGAACAGAAATGTTT
GGCTTATCTTAAGATTCCTTTCCAAGGTCAAAACAAGAAATCCCCCTCCATAATCAAGAG
ACATGCATTTTAGTAACATCAGATGTATTCTTCTCTTTTCCCTTATCAAATAGTTGCTCT
TCCCACACTCTGAGTTTGCAGTCCAACCCTTTTTTCCCCCCTAGAATAGGGGGTAAGGGA
AGGTGATGAAATGTTGGAACAATTGAACATCCCTGTCCATTTTCTCCAAAAGCCTTTTGT
ATTCTAGCAGATCTGTGCAATCTTTTTTTTTTCACATGACACTGTAGGCCTAGGCCTGAA
ATAACTGGGGAGATGAGTATCAGAATTTCTCAGCAAGAACTAGACAAAACATATGTCTTC
TTTAGTATGAATTGAGCTGGGAATGGAGTGGGAGGGCTTGGAGGAAGGAAAAAGAAGGCA
CTGTATTTGAATAAATATGAGTAAATTTATTAGAAACTTTCCACAATCAGCTCCAAAAAA
TTATTTTTTATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               4-227, - strand, RNAz p=0.999535

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-227, - strand, RNAz p=0.999535

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               30-138, - strand, RNAmicro p=0.923399

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               30-138, - strand, RNAmicro p=0.923399

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-770, gnl|bosTau2|chr2 (35498523-35497754)
               

               
               4-770, gnl|Hg17|chr2 (144977908-144977140)
               

               
               4-770, gnl|Mm7|chr2 (44993061-44992329)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-770, gnl|bosTau2|chr2 (35498523-35497754)
               

               
               4-770, gnl|Hg17|chr2 (144977908-144977140)
               

               
               4-770, gnl|Mm7|chr2 (44993061-44992329)

	4-770, gnl\|bosTau2\|chr2 (35498523-35497754)
	4-770, gnl\|Hg17\|chr2 (144977908-144977140)
	4-770, gnl\|Mm7\|chr2 (44993061-44992329)