Non-Coding RNA Search

Ss1.1-Pla1-C000001059_H04.5

Sequence:


               
               GGCTCACTCCCACTCGGCCNGGTCACAGGAGTAAGA------------ATGTGTATCTTG
AATTTAGCAATCAACCTAATTTTCCTCTTAGTTGGGCTGTATGCTGTGTGGTACAGGATC
TTACAGTTTCCTAGGAAACGCTTTTTATTGCTATCCAGATCTATGGATAAACTTTCTTAA
CAAACCCAATTTCTACAAACGTTGTTTACATCAAATTGGACAGGGATGCAGACGCTGTCC
ATGGCTCGTTCTATTTTTGTTTAAATCATTTGAAGTCGAAGCTGTGGACGGTTTGCTGTG
TCTCTTTCAGATTAGTCATTTACAGAGAAATCACAGACTTTTCCTACCACTCGTGTGTCC
GATAAGCCTCCCATCGGTGTCCTGTTTCTAGAACGTGTAGAACCAGTGTTCCTGTTTGTA
TCAGGGAAGCGGAGACTCTTAAGTGTAACGGAGAAATAGCTCAGCCTCCTTCTTCCCGAG
GGCTCTCCTCTCATGTCCTCTGGGAGTGAAGCTATAGCATCGCAGGGAAGACCGTGATTC
ACGTTCAGCCACAAACAAGCATTTCTTCACAACATGTGTGTTTGTAATATGCAATCGCAA
GTGTTTTTTTTTTAAAGGTATTATCATTTTTATTATTATTATTGACGAGTATTTACAGGT
ATTCTAGTAAAAGGATATTCTTTTAACTTCTGTTTTTGTTAGCAACACTGTTAGTCGTTA
GGGATGGACCTAACCTGCGCACTGTCTCACGGAACAGGGCGGGCATGGTCCGCAATTTGA
TTAAACAAGCATTGGTTCTTTGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTCACTCCCACTCGGCCNGGTCACAGGAGTAAGA------------ATGTGTATCTTG
AATTTAGCAATCAACCTAATTTTCCTCTTAGTTGGGCTGTATGCTGTGTGGTACAGGATC
TTACAGTTTCCTAGGAAACGCTTTTTATTGCTATCCAGATCTATGGATAAACTTTCTTAA
CAAACCCAATTTCTACAAACGTTGTTTACATCAAATTGGACAGGGATGCAGACGCTGTCC
ATGGCTCGTTCTATTTTTGTTTAAATCATTTGAAGTCGAAGCTGTGGACGGTTTGCTGTG
TCTCTTTCAGATTAGTCATTTACAGAGAAATCACAGACTTTTCCTACCACTCGTGTGTCC
GATAAGCCTCCCATCGGTGTCCTGTTTCTAGAACGTGTAGAACCAGTGTTCCTGTTTGTA
TCAGGGAAGCGGAGACTCTTAAGTGTAACGGAGAAATAGCTCAGCCTCCTTCTTCCCGAG
GGCTCTCCTCTCATGTCCTCTGGGAGTGAAGCTATAGCATCGCAGGGAAGACCGTGATTC
ACGTTCAGCCACAAACAAGCATTTCTTCACAACATGTGTGTTTGTAATATGCAATCGCAA
GTGTTTTTTTTTTAAAGGTATTATCATTTTTATTATTATTATTGACGAGTATTTACAGGT
ATTCTAGTAAAAGGATATTCTTTTAACTTCTGTTTTTGTTAGCAACACTGTTAGTCGTTA
GGGATGGACCTAACCTGCGCACTGTCTCACGGAACAGGGCGGGCATGGTCCGCAATTTGA
TTAAACAAGCATTGGTTCTTTGAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               132-330, + strand, RNAz p=0.9711

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               132-330, + strand, RNAz p=0.9711

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               202-325, + strand, RNAmicro p=0.999996

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               202-325, + strand, RNAmicro p=0.999996

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003728, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003728, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               25-780, gnl|bosTau2|chr6 (12189196-12189962)
               

               
               25-780, gnl|Hg17|chr4 (96447363-96446610)
               

               
               25-780, gnl|Mm7|chr3 (141722608-141723348)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               25-780, gnl|bosTau2|chr6 (12189196-12189962)
               

               
               25-780, gnl|Hg17|chr4 (96447363-96446610)
               

               
               25-780, gnl|Mm7|chr3 (141722608-141723348)

	25-780, gnl\|bosTau2\|chr6 (12189196-12189962)
	25-780, gnl\|Hg17\|chr4 (96447363-96446610)
	25-780, gnl\|Mm7\|chr3 (141722608-141723348)