Non-Coding RNA Search

Ss1.1-Pla1-C0000023_B11.5

Sequence:


               
               AACAAGAGAAAAAAGAAAATAACGGTGGCTTAAAGAGGTAGAAGTTTGTTTTCCTTTTTC
ACATAAGACCCTGGTGGCAGATGATTCGGGGCCAGCAAATAGAAGCCCCATGATCATCAG
GAACCTAGCAGTCATCTATCTTTCTGCCTCCACATATTAGCATATGACTTTCACTCTTAA
GGTCATAATCCAAGATGGTAGTTGATCCTCCAGCTGTCATGTCTTTGAAGGGAGAGAAGA
GAAAGGGTGAAAAAAAATTCCCCTCTCAGATAAGCCAATTAACTTTAAGAGACATTCCTA
GATTCCTGCATAATACTTCTGTTTAAATCTTTTTGGCCAGAATTTAGTTAAAACACAGTA
TCAAGCAACTGCAAGGAAGGCTGGGAAATGTAAGCACATCACAAGCTCCGAAAAAGTAAT
GGCTCCTCTTTGTAAGAAATCAAGGAGAAAGGATGAATGGCTAGAGGGCAGCTCTTCAGC
TCTGCCTCAGAGCTCTAGTTCACGGCACACGTGGGTACCACTTGCTGGAGGAGAGCCAGC
ATGGTTGCCTCATTTAGTGATGCACAGGATGGTGTTTTTCAGACCCTCGAGAAGCAACCA
GTCAAGTGATGGAGACAGATAGTGGCAATACCATCTGGTTTAGTTAGGATGCTCACGTTT
CCTAATTCCATCCTATAGAATCCCTCTTTTTTTTTTTTTTTTTAACTAACATGCTAATGT
CATCTGGCGAAGCTGAGAATTCAAGTGATGTTATAATCTGGGAAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAGAGAAAAAAGAAAATAACGGTGGCTTAAAGAGGTAGAAGTTTGTTTTCCTTTTTC
ACATAAGACCCTGGTGGCAGATGATTCGGGGCCAGCAAATAGAAGCCCCATGATCATCAG
GAACCTAGCAGTCATCTATCTTTCTGCCTCCACATATTAGCATATGACTTTCACTCTTAA
GGTCATAATCCAAGATGGTAGTTGATCCTCCAGCTGTCATGTCTTTGAAGGGAGAGAAGA
GAAAGGGTGAAAAAAAATTCCCCTCTCAGATAAGCCAATTAACTTTAAGAGACATTCCTA
GATTCCTGCATAATACTTCTGTTTAAATCTTTTTGGCCAGAATTTAGTTAAAACACAGTA
TCAAGCAACTGCAAGGAAGGCTGGGAAATGTAAGCACATCACAAGCTCCGAAAAAGTAAT
GGCTCCTCTTTGTAAGAAATCAAGGAGAAAGGATGAATGGCTAGAGGGCAGCTCTTCAGC
TCTGCCTCAGAGCTCTAGTTCACGGCACACGTGGGTACCACTTGCTGGAGGAGAGCCAGC
ATGGTTGCCTCATTTAGTGATGCACAGGATGGTGTTTTTCAGACCCTCGAGAAGCAACCA
GTCAAGTGATGGAGACAGATAGTGGCAATACCATCTGGTTTAGTTAGGATGCTCACGTTT
CCTAATTCCATCCTATAGAATCCCTCTTTTTTTTTTTTTTTTTAACTAACATGCTAATGT
CATCTGGCGAAGCTGAGAATTCAAGTGATGTTATAATCTGGGAAACCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               147-294, + strand, RNAz p=0.999996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-294, + strand, RNAz p=0.999996

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               35-597, gnl|bosTau2|chr1 (83761367-83761943)
               

               
               35-597, gnl|Hg17|chr10 (125515817-125515249)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-597, gnl|bosTau2|chr1 (83761367-83761943)
               

               
               35-597, gnl|Hg17|chr10 (125515817-125515249)

	35-597, gnl\|bosTau2\|chr1 (83761367-83761943)
	35-597, gnl\|Hg17\|chr10 (125515817-125515249)