Non-Coding RNA Search

Ss1.1-Pla1-C0000023_I13.5

Sequence:


               
               GCGGCTCGAGTAGTAATAGAATTTTCTGAAGAATATCCAAATAAACCGCCAACTGTTAGG
TTTTTATCCAAAATGTTTCATCCAAATGGTAAGTCTCAATTTATTAGTCTCTGAAAATGA
TAGGAGGAAAAAAGTTGTTTCATCCTTTCAGGCCTTGCCCATACCTCTCATTGTTAGGGC
TCACATCTGGATGTTGCTCCCATGTCAGTGTTAACCATACTTCTATAGTCTGGAACCTTA
TCCAGGTTCCAAATTTGAGGAAAAGTTTTGTTTTAACTTCTGATTTTAAAGTAATAGCTT
TTTATTTGTCAAAATGTGAAAGGTACCAATTTTAAGGTAGCTTAAAATTTAGCTTGTAAG
AGTTCTCTTGAGGTATAGTGGTTTAAGAATCATGCACTGTCGCTGCTATGGCTCAGATCA
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------TTAAAAAAAAAA
AGAACAAAATTTAGATCACGTTGTATGTAATTTTTGTATACACTGTGAATATTTTCTCTT
ACTAAATATTCTTTTGTATCATTCTTAATGGCTGCAAAATGTTTATGACTTTGCTATCAT
TTATTTAATCACTCTCCACTTGGTGATTTTCAACTAATTTCAGTTCTAAATAGCACTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGTAGTAATAGAATTTTCTGAAGAATATCCAAATAAACCGCCAACTGTTAGG
TTTTTATCCAAAATGTTTCATCCAAATGGTAAGTCTCAATTTATTAGTCTCTGAAAATGA
TAGGAGGAAAAAAGTTGTTTCATCCTTTCAGGCCTTGCCCATACCTCTCATTGTTAGGGC
TCACATCTGGATGTTGCTCCCATGTCAGTGTTAACCATACTTCTATAGTCTGGAACCTTA
TCCAGGTTCCAAATTTGAGGAAAAGTTTTGTTTTAACTTCTGATTTTAAAGTAATAGCTT
TTTATTTGTCAAAATGTGAAAGGTACCAATTTTAAGGTAGCTTAAAATTTAGCTTGTAAG
AGTTCTCTTGAGGTATAGTGGTTTAAGAATCATGCACTGTCGCTGCTATGGCTCAGATCA
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------TTAAAAAAAAAA
AGAACAAAATTTAGATCACGTTGTATGTAATTTTTGTATACACTGTGAATATTTTCTCTT
ACTAAATATTCTTTTGTATCATTCTTAATGGCTGCAAAATGTTTATGACTTTGCTATCAT
TTATTTAATCACTCTCCACTTGGTGATTTTCAACTAATTTCAGTTCTAAATAGCACTTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               163-276, + strand, RNAz p=0.742914

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-276, + strand, RNAz p=0.742914

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-359, gnl|bosTau2|chr7 (31298000-31297651)
               

               
               11-359, gnl|Hg17|chr5 (133744321-133745748)
               

               
               11-359, gnl|Mm7|chr11 (51948228-51947891)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-359, gnl|bosTau2|chr7 (31298000-31297651)
               

               
               11-359, gnl|Hg17|chr5 (133744321-133745748)
               

               
               11-359, gnl|Mm7|chr11 (51948228-51947891)

	11-359, gnl\|bosTau2\|chr7 (31298000-31297651)
	11-359, gnl\|Hg17\|chr5 (133744321-133745748)
	11-359, gnl\|Mm7\|chr11 (51948228-51947891)