Non-Coding RNA Search

Ss1.1-Pla1-C0000027_P11.5

Sequence:


               
               CCTGGTGGCCCGCACTTCCTCCAGAGGGCAGCCAGGTGGCACTGGTGCCCTGGTTGGGCA
GCACAGAAATCGTTCTTCTTCCTGGGCTGTTCCCAGGCCCTGGCAGGGCCACAGGGCCTC
TGGACCTGGTGGCATCTCACCCCAGGGGCCTAGGACACGGGTCTCTTGGCAGTCGGAGGG
CAAGCCCAAATCACAGTCCACATCCTCCGGAATGATGGGGATGCGCTGGCTCAGGTCCCG
GGCCCCGGCATGGCAGCCGGGTGGGGGCTCCTGGGCAAGCGTGTACTGCACGCGCACCGA
GCAGTCCTCGGTGTAGCCGCCACCATGGGCCACCTGCTTCTCTTCATAGAAGCAGCAGGG
CAGGCCCTCATATTTCACCCCATCTGTCCTGGGTAAGTGGTCTGGGTGGAGGCCACACGG
GCCCGGGGAGCTCCCCAGCTTCGACTCCCTGGCCATGGGGCCCAGGAACAAGGGGCTGCC
CCCGGCCGCTCCCCCACTGGGCTCTGGGTGGGAAGGCTGGGGCTCACAGCAGCAGGCACA
AGACGGCCCCTCCTGGGCCCCCTTCCAGGTCCTCGTGAGGTCCGGGGCGGCCCCAGGAGA
GGCCTCGAGCCCCACTTCTGAGGTAGAGCTGTTGGGCCCCCGGGGCTCCAGGGAGGAGCT
GCTGCTATAGTTCATCTCCAGGCTGCAGTTGGAGAGCCGGTCTCCCGAGGGGGAGGCGGG
GCCGGCCCAAGGCTCTCCCCGCCCAGCACCTTGACCCGGTGCCGCTGGGAGCTCCTCAGG
TGGTGGGGAGCCCTCAAGGCGAACAACGGGCACCCGGCCCGAGCCCCCCACATCGCCAGC
ACGACAAGGGCTCCGGCTACGGTAGATGAAGGGGTCGTAGTCGCTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGTGGCCCGCACTTCCTCCAGAGGGCAGCCAGGTGGCACTGGTGCCCTGGTTGGGCA
GCACAGAAATCGTTCTTCTTCCTGGGCTGTTCCCAGGCCCTGGCAGGGCCACAGGGCCTC
TGGACCTGGTGGCATCTCACCCCAGGGGCCTAGGACACGGGTCTCTTGGCAGTCGGAGGG
CAAGCCCAAATCACAGTCCACATCCTCCGGAATGATGGGGATGCGCTGGCTCAGGTCCCG
GGCCCCGGCATGGCAGCCGGGTGGGGGCTCCTGGGCAAGCGTGTACTGCACGCGCACCGA
GCAGTCCTCGGTGTAGCCGCCACCATGGGCCACCTGCTTCTCTTCATAGAAGCAGCAGGG
CAGGCCCTCATATTTCACCCCATCTGTCCTGGGTAAGTGGTCTGGGTGGAGGCCACACGG
GCCCGGGGAGCTCCCCAGCTTCGACTCCCTGGCCATGGGGCCCAGGAACAAGGGGCTGCC
CCCGGCCGCTCCCCCACTGGGCTCTGGGTGGGAAGGCTGGGGCTCACAGCAGCAGGCACA
AGACGGCCCCTCCTGGGCCCCCTTCCAGGTCCTCGTGAGGTCCGGGGCGGCCCCAGGAGA
GGCCTCGAGCCCCACTTCTGAGGTAGAGCTGTTGGGCCCCCGGGGCTCCAGGGAGGAGCT
GCTGCTATAGTTCATCTCCAGGCTGCAGTTGGAGAGCCGGTCTCCCGAGGGGGAGGCGGG
GCCGGCCCAAGGCTCTCCCCGCCCAGCACCTTGACCCGGTGCCGCTGGGAGCTCCTCAGG
TGGTGGGGAGCCCTCAAGGCGAACAACGGGCACCCGGCCCGAGCCCCCCACATCGCCAGC
ACGACAAGGGCTCCGGCTACGGTAGATGAAGGGGTCGTAGTCGCTGCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-480, - strand, RNAz p=0.999335
               

               
               518-797, + strand, RNAz p=0.980702

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-480, - strand, RNAz p=0.999335
               

               
               518-797, + strand, RNAz p=0.980702

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               159-317, DB325112 NT2RP7 Homo sapiens cDNA clone NT2RP7017971 3', mRNA 
(dbj|DB325112.1|), blast E-value=9.80909e-45, identity=89.94% 
               

               
               159-315, DB384907 BGGI11 Homo sapiens cDNA clone BGGI11000013 3', mRNA 
(dbj|DB384907.1|), blast E-value=4.99997e-41, identity=89.17% 
               

               
               159-414, BX331217 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens 
(emb|BX331217.2|), blast E-value=4e-26, identity=93.18% 
               

               
               159-414, K-EST0064857 S21SNU520 Homo sapiens cDNA clone S21SNU520-3-D12 5', 
(gb|BM786180.1|), blast E-value=4e-26, identity=93.18% 
               

               
               159-414, 17000599952765 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN388938.1|), blast E-value=4e-26, identity=93.18% 
               

               
               7-317, UMC-bend_0A02-004-h06 Uterus (endometium) bend Bos taurus cDNA 3', 
(gb|CN654570.1|), blast E-value=0, identity=86.5%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               159-317, DB325112 NT2RP7 Homo sapiens cDNA clone NT2RP7017971 3', mRNA 
(dbj|DB325112.1|), blast E-value=9.80909e-45, identity=89.94% 
               

               
               159-315, DB384907 BGGI11 Homo sapiens cDNA clone BGGI11000013 3', mRNA 
(dbj|DB384907.1|), blast E-value=4.99997e-41, identity=89.17% 
               

               
               159-414, BX331217 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens 
(emb|BX331217.2|), blast E-value=4e-26, identity=93.18% 
               

               
               159-414, K-EST0064857 S21SNU520 Homo sapiens cDNA clone S21SNU520-3-D12 5', 
(gb|BM786180.1|), blast E-value=4e-26, identity=93.18% 
               

               
               159-414, 17000599952765 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence 
(gb|CN388938.1|), blast E-value=4e-26, identity=93.18% 
               

               
               7-317, UMC-bend_0A02-004-h06 Uterus (endometium) bend Bos taurus cDNA 3', 
(gb|CN654570.1|), blast E-value=0, identity=86.5%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB051436, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB051436, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-887, gnl|bosTau2|chr17 (41187505-41186571)
               

               
               1-887, gnl|Hg17|chr22 (27771426-27770495)
               

               
               1-887, gnl|Mm7|chr11 (5232875-5233755)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-887, gnl|bosTau2|chr17 (41187505-41186571)
               

               
               1-887, gnl|Hg17|chr22 (27771426-27770495)
               

               
               1-887, gnl|Mm7|chr11 (5232875-5233755)

	1-480, - strand, RNAz p=0.999335
	518-797, + strand, RNAz p=0.980702

	159-317, DB325112 NT2RP7 Homo sapiens cDNA clone NT2RP7017971 3', mRNA (dbj\|DB325112.1\|), blast E-value=9.80909e-45, identity=89.94%
	159-315, DB384907 BGGI11 Homo sapiens cDNA clone BGGI11000013 3', mRNA (dbj\|DB384907.1\|), blast E-value=4.99997e-41, identity=89.17%
	159-414, BX331217 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens (emb\|BX331217.2\|), blast E-value=4e-26, identity=93.18%
	159-414, K-EST0064857 S21SNU520 Homo sapiens cDNA clone S21SNU520-3-D12 5', (gb\|BM786180.1\|), blast E-value=4e-26, identity=93.18%
	159-414, 17000599952765 GRN_PREHEP Homo sapiens cDNA 5', mRNA sequence (gb\|CN388938.1\|), blast E-value=4e-26, identity=93.18%
	7-317, UMC-bend_0A02-004-h06 Uterus (endometium) bend Bos taurus cDNA 3', (gb\|CN654570.1\|), blast E-value=0, identity=86.5%

	1-887, gnl\|bosTau2\|chr17 (41187505-41186571)
	1-887, gnl\|Hg17\|chr22 (27771426-27770495)
	1-887, gnl\|Mm7\|chr11 (5232875-5233755)