Non-Coding RNA Search

Ss1.1-Pla1-C0000028_O01.5

Sequence:


               
               GGCCCGGTCTCCATGGAAACGGCTTCCCCGGGAGCAGGGAGGTCAGGCGCAGACCTCGCA
CAATCAATGGATCAATGCAAGCCCCGCTCCGCTCCAGACCAAACAGCACCGGGCTCTGGC
TGGTCCGCTCTCCCAGCGTAGAGAGCGGGGAGCTTGGGTGCACCCCCACGCTCGCACGCG
AGGAGAGCTGTGCGACGCAGGTTTGCACGCACACCTTCAAGAGAAGACAAAGAGGGTGAA
GGGTGTCGGGGAGGTTAGGGCGGACCGGATTGCATGGGCACTCAGGCGTGCCCCCTGTCC
CAGCCGGACACGCAGGACACCGCCAAACAGGACTTCGAAAAACAGAGTGGTACCGACAGC
GACAGCGGGTCGAGTCACGCCCCCCCCCCAACTCTTCCCACACCCGCAAGACTCAATCCC
CATCCTAGTGCTGAGTCCACTTTAATTGAGGACCAGGAAGAAAGTAGTCTTCCCCCAGCT
GAAAGTGCCAGGTCCAGGGCAGACTCCTTTGCAGTTAAGGCCTCGGAGGTGGCGCCTCAG
TATACCCTACCCCGTAGAGACCAGGGCTCCGGTGTAAAACACTCTCCTTTGCTGGGCACA
GGGGCAAAAGCTAACCCGCAGAAATCTGTCTATGTGTGTAGGTAAACACAGGACTCAAAG
ACAGGCACGACATTCTCCTCCAAACCTGCCCTCCCACCTTCAAGATGTGGTCCCGACCAG
AACATTCTTAAACTTTCATCCTTCCAACTCGAAGAAGCGGAAAAGGAAAGATAAACGGTA
TTTTTAAAAATAGGGGAAAGTGTGCCAGAGGAGCAGTGTCCCTGAACCATGCACAGCATG
GCCGACACCTCCTGATGCTTTCACCAACTCTGCATCTTCTCTCCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCCGGTCTCCATGGAAACGGCTTCCCCGGGAGCAGGGAGGTCAGGCGCAGACCTCGCA
CAATCAATGGATCAATGCAAGCCCCGCTCCGCTCCAGACCAAACAGCACCGGGCTCTGGC
TGGTCCGCTCTCCCAGCGTAGAGAGCGGGGAGCTTGGGTGCACCCCCACGCTCGCACGCG
AGGAGAGCTGTGCGACGCAGGTTTGCACGCACACCTTCAAGAGAAGACAAAGAGGGTGAA
GGGTGTCGGGGAGGTTAGGGCGGACCGGATTGCATGGGCACTCAGGCGTGCCCCCTGTCC
CAGCCGGACACGCAGGACACCGCCAAACAGGACTTCGAAAAACAGAGTGGTACCGACAGC
GACAGCGGGTCGAGTCACGCCCCCCCCCCAACTCTTCCCACACCCGCAAGACTCAATCCC
CATCCTAGTGCTGAGTCCACTTTAATTGAGGACCAGGAAGAAAGTAGTCTTCCCCCAGCT
GAAAGTGCCAGGTCCAGGGCAGACTCCTTTGCAGTTAAGGCCTCGGAGGTGGCGCCTCAG
TATACCCTACCCCGTAGAGACCAGGGCTCCGGTGTAAAACACTCTCCTTTGCTGGGCACA
GGGGCAAAAGCTAACCCGCAGAAATCTGTCTATGTGTGTAGGTAAACACAGGACTCAAAG
ACAGGCACGACATTCTCCTCCAAACCTGCCCTCCCACCTTCAAGATGTGGTCCCGACCAG
AACATTCTTAAACTTTCATCCTTCCAACTCGAAGAAGCGGAAAAGGAAAGATAAACGGTA
TTTTTAAAAATAGGGGAAAGTGTGCCAGAGGAGCAGTGTCCCTGAACCATGCACAGCATG
GCCGACACCTCCTGATGCTTTCACCAACTCTGCATCTTCTCTCCTTCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               121-238, - strand, RNAz p=0.996939

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-238, - strand, RNAz p=0.996939

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-888, gnl|bosTau2|chr23 (9331414-9330535)
               

               
               1-888, gnl|Hg17|chr6 (35289436-35288573)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr23 (9331414-9330535)
               

               
               1-888, gnl|Hg17|chr6 (35289436-35288573)

	1-888, gnl\|bosTau2\|chr23 (9331414-9330535)
	1-888, gnl\|Hg17\|chr6 (35289436-35288573)