Non-Coding RNA Search

Ss1.1-Pla1-C0000030_G16.5

Sequence:


               
               CTTGCCAGCCGGCCCAAGTCTGTAGCCGTGGGTTGAACAGAGATGGTCTGGTGGTTTTCT
CTACCATCCTCCCACTTGAGAGTTCCTTTCTGGTTGGAGACAGGATTCTGAGCACGTTTG
GTGTCAAAGGCTGTCTTGGGGTTGTGCCAATTAATTACCAAACGTTGAGCCCGTGGGCTG
TAAGTGGGAGCGTTACCCCATGAGCCTTACCCTGGTCGGTCACCTTCCTAGACCATAGGA
GCGGCTTCCCTCTCATTCCTTCTCTTCAATCTGCTTTCCTGCCCCCCTTCAACCCAGTCT
GCACCCCACTGCTTTCCTGTTCTCTCTGGGTGGTAGGGAGAGTGACTCCCTGCTTGAGGA
CACTCTCTCTCAGGCACAGCATTTGCCTGTAGAACGTTCCCTGAGCCTGTGAGCACTCCC
AGCGGGGAAGTGGACAGGAGCCATTGGCCATAACCAGACAGAATTCGGAGACGTTTTCAT
AAAGCTCCACCGAGGGTTTTAAAGAAAATATGTAGCATGATTTTTTAGAAGCGGAAGATA
ATTTAAATAGGATTTGAATCATGCAACAACCAGAGTATCACAACCAGGAAGACTCCTGGG
CCCCATTCCTAGGACATGGGAACTTTATTTTCTCCTTGTTAAGACATAGGAAAACTTAAT
TTCTAAATGGTCAGTGTCCAGTTGAAGGCAGAACACTAATCAGACTTCAAGGCCCAAAAC
TTGGGGACTAGACCAACTTGTATTGAGGGAACTCTGCCACCCGCGAATCTATGGATAAAT
TAAATGACACTACTACCCTGATTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCCAGCCGGCCCAAGTCTGTAGCCGTGGGTTGAACAGAGATGGTCTGGTGGTTTTCT
CTACCATCCTCCCACTTGAGAGTTCCTTTCTGGTTGGAGACAGGATTCTGAGCACGTTTG
GTGTCAAAGGCTGTCTTGGGGTTGTGCCAATTAATTACCAAACGTTGAGCCCGTGGGCTG
TAAGTGGGAGCGTTACCCCATGAGCCTTACCCTGGTCGGTCACCTTCCTAGACCATAGGA
GCGGCTTCCCTCTCATTCCTTCTCTTCAATCTGCTTTCCTGCCCCCCTTCAACCCAGTCT
GCACCCCACTGCTTTCCTGTTCTCTCTGGGTGGTAGGGAGAGTGACTCCCTGCTTGAGGA
CACTCTCTCTCAGGCACAGCATTTGCCTGTAGAACGTTCCCTGAGCCTGTGAGCACTCCC
AGCGGGGAAGTGGACAGGAGCCATTGGCCATAACCAGACAGAATTCGGAGACGTTTTCAT
AAAGCTCCACCGAGGGTTTTAAAGAAAATATGTAGCATGATTTTTTAGAAGCGGAAGATA
ATTTAAATAGGATTTGAATCATGCAACAACCAGAGTATCACAACCAGGAAGACTCCTGGG
CCCCATTCCTAGGACATGGGAACTTTATTTTCTCCTTGTTAAGACATAGGAAAACTTAAT
TTCTAAATGGTCAGTGTCCAGTTGAAGGCAGAACACTAATCAGACTTCAAGGCCCAAAAC
TTGGGGACTAGACCAACTTGTATTGAGGGAACTCTGCCACCCGCGAATCTATGGATAAAT
TAAATGACACTACTACCCTGATTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               77-194, - strand, RNAz p=0.591913
               

               
               234-509, - strand, RNAz p=0.997955

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-194, - strand, RNAz p=0.591913
               

               
               234-509, - strand, RNAz p=0.997955

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               327-442, - strand, RNAmicro p=0.999998

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               327-442, - strand, RNAmicro p=0.999998

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-787, gnl|bosTau2|chr15 (15022711-15021935)
               

               
               2-787, gnl|Hg17|chr11 (117898542-117899334)
               

               
               2-787, gnl|Mm7|chr9 (44741840-44741070)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-787, gnl|bosTau2|chr15 (15022711-15021935)
               

               
               2-787, gnl|Hg17|chr11 (117898542-117899334)
               

               
               2-787, gnl|Mm7|chr9 (44741840-44741070)

	77-194, - strand, RNAz p=0.591913
	234-509, - strand, RNAz p=0.997955

	2-787, gnl\|bosTau2\|chr15 (15022711-15021935)
	2-787, gnl\|Hg17\|chr11 (117898542-117899334)
	2-787, gnl\|Mm7\|chr9 (44741840-44741070)