Ss1.1-Pla1-C0000031_D12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACCTCTTTGCCTGCTCTTTCCAGTTCCTTCCTTGAATTCTCTCTCCTGTTAGTGATGCTG GGAAACTCATAGGACAGGCAAAGTAACTATTTAAAACCTTGTAACTGGGGCCTTGCTCCC ACCCCTTTTTGTCCTGTTCCTCCTTTCCTCTTCCTTCATGCCCTTACCACCCACAAGGAA TTTTCCTATCACTGTGAACTTTGCTGGTGCAGAGGAACATCTGCCTTCACTTTTTTTTGG ACCACAGCCACCCAGCTATTTCTTAAACTTCTCTTCCCAAAATTAAAAAAAAAAAAAAAA AAAAAATCCTCTTGGCCTGGTTGTTCAAAGGATAAGAATAGCTTTATCCTCTTCAGTACC AAACTCACTTCAGTACCCTTACTGAGGCCATGAGAGCCTAGGGGTTTCTGCCCAGGACTG GAGCCATGGCATATTGGCAGAGACCAAACAGGGACTGGGAAAGAGGGGTGACGTTCCCTT TCCCCACCACCTCCAACCTCCACCCGCGATGAGCCGCCCTGAACAGCTGCAGGCACCGGC CGGCCCCCTTGCACGGGAGCTGATCAGGGTTGAGTGCAGTCCTGGGGACCAGGGAATAGC ATGCTGAGCTCTGTCAGCTCAGGGTCTGCGCACATC------------AAGGGATAGGTG GGGGAAGGAACACCAATGATTTTTTTCCTCCCAGCCTTTTACCGATGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACCTCTTTGCCTGCTCTTTCCAGTTCCTTCCTTGAATTCTCTCTCCTGTTAGTGATGCTG GGAAACTCATAGGACAGGCAAAGTAACTATTTAAAACCTTGTAACTGGGGCCTTGCTCCC ACCCCTTTTTGTCCTGTTCCTCCTTTCCTCTTCCTTCATGCCCTTACCACCCACAAGGAA TTTTCCTATCACTGTGAACTTTGCTGGTGCAGAGGAACATCTGCCTTCACTTTTTTTTGG ACCACAGCCACCCAGCTATTTCTTAAACTTCTCTTCCCAAAATTAAAAAAAAAAAAAAAA AAAAAATCCTCTTGGCCTGGTTGTTCAAAGGATAAGAATAGCTTTATCCTCTTCAGTACC AAACTCACTTCAGTACCCTTACTGAGGCCATGAGAGCCTAGGGGTTTCTGCCCAGGACTG GAGCCATGGCATATTGGCAGAGACCAAACAGGGACTGGGAAAGAGGGGTGACGTTCCCTT TCCCCACCACCTCCAACCTCCACCCGCGATGAGCCGCCCTGAACAGCTGCAGGCACCGGC CGGCCCCCTTGCACGGGAGCTGATCAGGGTTGAGTGCAGTCCTGGGGACCAGGGAATAGC ATGCTGAGCTCTGTCAGCTCAGGGTCTGCGCACATC------------AAGGGATAGGTG GGGGAAGGAACACCAATGATTTTTTTCCTCCCAGCCTTTTACCGATGG |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 137-233, - strand, RNAz p=0.766609 | |
| 306-500, - strand, RNAz p=0.967412 | |
| 341-449, - strand, RNAz p=0.880774 | |
| 490-620, - strand, RNAz p=0.926665 | |
| 532-623, - strand, RNAz p=0.693585 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 137-233, - strand, RNAz p=0.766609 | |
| 306-500, - strand, RNAz p=0.967412 | |
| 341-449, - strand, RNAz p=0.880774 | |
| 490-620, - strand, RNAz p=0.926665 | |
| 532-623, - strand, RNAz p=0.693585 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 479-612, - strand, RNAmicro p=0.996212 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_002657, - |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 4-688, gnl|bosTau2|chr13 (42347610-42348278) | |
| 4-688, gnl|canFam2|chr24 (24564855-24565383) | |
| 4-688, gnl|canFam2|chr24 (24566163-24564857) | |
| 4-688, gnl|dasNov1|scaffold_24400 (11372-11876) | |
| 4-688, gnl|dasNov1|scaffold_24400 (12716-11374) | |
| 4-688, gnl|echTel1|scaffold_316323 (15094-15565) | |
| 4-688, gnl|echTel1|scaffold_316323 (16301-15096) | |
| 4-688, gnl|hg17|chr20 (30244791-30245325) | |
| 4-688, gnl|Hg17|chr20 (30245587-30244839) | |
| 4-688, gnl|hg17|chr4 (85524334-85525667) | |
| 4-688, gnl|loxAfr1|scaffold_27064 (18278-17754) | |
| 4-688, gnl|loxAfr1|scaffold_27064 (16947-18276) | |
| 4-688, gnl|mm7|chr2 (152969401-152969893) | |
| 4-688, gnl|mm7|chr2 (152970630-152969404) | |
| 4-688, gnl|Mm7|chr2 (152970075-152969443) | |
| 4-688, gnl|monDom2|scaffold_38 (862993-862332) | |
| 4-688, gnl|monDom2|scaffold_38 (861450-862992) | |
| 4-688, gnl|oryCun1|scaffold_191471 (17722-18194) | |
| 4-688, gnl|oryCun1|scaffold_191471 (18987-17724) | |
| 4-688, gnl|panTro1|chr21 (31940740-31941278) | |
| 4-688, gnl|panTro1|chr3 (48160550-48159217) | |
| 4-688, gnl|rheMac2|chr10 (32382984-32382465) | |
| 4-688, gnl|rheMac2|chr10 (32381632-32382982) | |
| 4-688, gnl|rn3|chr3 (143485281-143485773) | |
| 4-688, gnl|rn3|chr3 (143486528-143485284) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-688, gnl|bosTau2|chr13 (42347610-42348278) | |
| 4-688, gnl|canFam2|chr24 (24564855-24565383) | |
| 4-688, gnl|canFam2|chr24 (24566163-24564857) | |
| 4-688, gnl|dasNov1|scaffold_24400 (11372-11876) | |
| 4-688, gnl|dasNov1|scaffold_24400 (12716-11374) | |
| 4-688, gnl|echTel1|scaffold_316323 (15094-15565) | |
| 4-688, gnl|echTel1|scaffold_316323 (16301-15096) | |
| 4-688, gnl|hg17|chr20 (30244791-30245325) | |
| 4-688, gnl|Hg17|chr20 (30245587-30244839) | |
| 4-688, gnl|hg17|chr4 (85524334-85525667) | |
| 4-688, gnl|loxAfr1|scaffold_27064 (18278-17754) | |
| 4-688, gnl|loxAfr1|scaffold_27064 (16947-18276) | |
| 4-688, gnl|mm7|chr2 (152969401-152969893) | |
| 4-688, gnl|mm7|chr2 (152970630-152969404) | |
| 4-688, gnl|Mm7|chr2 (152970075-152969443) | |
| 4-688, gnl|monDom2|scaffold_38 (862993-862332) | |
| 4-688, gnl|monDom2|scaffold_38 (861450-862992) | |
| 4-688, gnl|oryCun1|scaffold_191471 (17722-18194) | |
| 4-688, gnl|oryCun1|scaffold_191471 (18987-17724) | |
| 4-688, gnl|panTro1|chr21 (31940740-31941278) | |
| 4-688, gnl|panTro1|chr3 (48160550-48159217) | |
| 4-688, gnl|rheMac2|chr10 (32382984-32382465) | |
| 4-688, gnl|rheMac2|chr10 (32381632-32382982) | |
| 4-688, gnl|rn3|chr3 (143485281-143485773) | |
| 4-688, gnl|rn3|chr3 (143486528-143485284) |