Non-Coding RNA Search

Ss1.1-Pla1-C0000038_O03.5

Sequence:


               
               CGAAGCTTCAAGGTGCTACCAACACCGAGACTCTCAGACCCTCCTCTGCCTCTAATATAT
CACTCATGGTGACATTTTGTGGGAAGCCCTTTATTCTCCATTACTCTACATTGTTATAAC
CTCACAGCAGTGGTGTTTTCAAGTCTTCTGACAGCACAGGAACGTGTCAAGTGGGGAGTT
TGGAACATGCCTAGGACTCACATTTACTAAGCTGGTAAAACTCTGCTTTAAATGGCAGTT
CAAACCTCAAAGCAGCTCTCATTTCAAATTTTAAAATAAAAGTTCAACAAACCCCTAGAT
TATCCCCTTTTAAACTGCTGCTCCAGTTATAGTTGGTGACATATAATTAGACTGTTTAAA
ATGCTGGCAAAACAGATAATGAAGTAAGAGAAACAGATCAACAACATATGTTCACCTTAA
ACCATCTGTCCATGATTTCAACCATGACTAACTGGTTATGAGATAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAAGCTTCAAGGTGCTACCAACACCGAGACTCTCAGACCCTCCTCTGCCTCTAATATAT
CACTCATGGTGACATTTTGTGGGAAGCCCTTTATTCTCCATTACTCTACATTGTTATAAC
CTCACAGCAGTGGTGTTTTCAAGTCTTCTGACAGCACAGGAACGTGTCAAGTGGGGAGTT
TGGAACATGCCTAGGACTCACATTTACTAAGCTGGTAAAACTCTGCTTTAAATGGCAGTT
CAAACCTCAAAGCAGCTCTCATTTCAAATTTTAAAATAAAAGTTCAACAAACCCCTAGAT
TATCCCCTTTTAAACTGCTGCTCCAGTTATAGTTGGTGACATATAATTAGACTGTTTAAA
ATGCTGGCAAAACAGATAATGAAGTAAGAGAAACAGATCAACAACATATGTTCACCTTAA
ACCATCTGTCCATGATTTCAACCATGACTAACTGGTTATGAGATAGGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-96, - strand, RNAz p=0.716522

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-96, - strand, RNAz p=0.716522

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               2-140, gnl|bosTau2|chr14 (26225429-26225295)
               

               
               2-140, gnl|canFam2|chr13 (21363279-21363517)
               

               
               2-140, gnl|dasNov1|scaffold_194967 (4397-4625)
               

               
               2-140, gnl|echTel1|scaffold_288237 (36158-35908)
               

               
               2-140, gnl|hg17|chr8 (120188515-120188753)
               

               
               2-140, gnl|Hg17|chr8 (120188555-120188682)
               

               
               2-140, gnl|loxAfr1|scaffold_43 (213121-212903)
               

               
               2-140, gnl|mm7|chr15 (54523106-54523341)
               

               
               2-140, gnl|Mm7|chr15 (54523145-54523270)
               

               
               2-140, gnl|panTro1|chr7_random (5844727-5844489)
               

               
               2-140, gnl|rheMac2|chr8 (121627663-121627901)
               

               
               2-140, gnl|rn3|chr7 (90878405-90878625)
               


               
               144-468, gnl|bosTau2|chr14 (26225242-26224910)
               

               
               144-468, gnl|Hg17|chr8 (120188700-120189023)
               

               
               144-468, gnl|Mm7|chr15 (54523291-54523611)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-140, gnl|bosTau2|chr14 (26225429-26225295)
               

               
               2-140, gnl|canFam2|chr13 (21363279-21363517)
               

               
               2-140, gnl|dasNov1|scaffold_194967 (4397-4625)
               

               
               2-140, gnl|echTel1|scaffold_288237 (36158-35908)
               

               
               2-140, gnl|hg17|chr8 (120188515-120188753)
               

               
               2-140, gnl|Hg17|chr8 (120188555-120188682)
               

               
               2-140, gnl|loxAfr1|scaffold_43 (213121-212903)
               

               
               2-140, gnl|mm7|chr15 (54523106-54523341)
               

               
               2-140, gnl|Mm7|chr15 (54523145-54523270)
               

               
               2-140, gnl|panTro1|chr7_random (5844727-5844489)
               

               
               2-140, gnl|rheMac2|chr8 (121627663-121627901)
               

               
               2-140, gnl|rn3|chr7 (90878405-90878625)
               


               
               144-468, gnl|bosTau2|chr14 (26225242-26224910)
               

               
               144-468, gnl|Hg17|chr8 (120188700-120189023)
               

               
               144-468, gnl|Mm7|chr15 (54523291-54523611)

	2-140, gnl\|bosTau2\|chr14 (26225429-26225295)
	2-140, gnl\|canFam2\|chr13 (21363279-21363517)
	2-140, gnl\|dasNov1\|scaffold_194967 (4397-4625)
	2-140, gnl\|echTel1\|scaffold_288237 (36158-35908)
	2-140, gnl\|hg17\|chr8 (120188515-120188753)
	2-140, gnl\|Hg17\|chr8 (120188555-120188682)
	2-140, gnl\|loxAfr1\|scaffold_43 (213121-212903)
	2-140, gnl\|mm7\|chr15 (54523106-54523341)
	2-140, gnl\|Mm7\|chr15 (54523145-54523270)
	2-140, gnl\|panTro1\|chr7_random (5844727-5844489)
	2-140, gnl\|rheMac2\|chr8 (121627663-121627901)
	2-140, gnl\|rn3\|chr7 (90878405-90878625)

	144-468, gnl\|bosTau2\|chr14 (26225242-26224910)
	144-468, gnl\|Hg17\|chr8 (120188700-120189023)
	144-468, gnl\|Mm7\|chr15 (54523291-54523611)