Non-Coding RNA Search

Ss1.1-Pla1-C0000045_M19.5

Sequence:


               
               GAGGAATCCAGGTCCCTCTTTCATTGTTACATTAATGAAGTGGACCAGTTGGACAAGGCC
AAAGCTTGTTTCCAGACCACGGCCCTCGATAGTAATGTTCAGCTCCAAGAAGCCATCAGA
CGCAGTGGGCAGCCGGAGGAGGAGCTCAACAGGCTCATGAAATTTGACATTCCCAACTTT
GTCAACACAGACCAGAACTCCTCCTTTGGGGAAGACGATCTCCTGATATCGGAACCACCT
ATTGTTCTAGAAAATAAGCCAGTTGCCCAGACCCCACACAAAGACTTGGATTGAGAAGCA
TGTTTTGTAAAGTGTATACCTGAAGAGGCTGGTCTGTCTTTGTATAGTACGAAATCTCCA
TTCACCAAAATTGTGTGCGTTTGTATATGAGAGACAGAGACAGAGAGACCAAAAGGCAAA
ATGACAGAGAAGAGAGCCCCCTGGGAAGAGAGCTGATTCAGCTGTTTTTACGCCCTCAAA
CACATATGGGGCTTTTGGGAGGGGGAGAACCAAGTAGTTACACTGTCTCATCTTCCTTGT
TGTTGAAGAACTTGGCCACATACTCGGCATCATCACTCTTGAATGGGGTTGACATATGGC
CTTCCTGTCTGCCACTGCTATGCTCTTCATTAGTGAGTTGCTTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAATCCAGGTCCCTCTTTCATTGTTACATTAATGAAGTGGACCAGTTGGACAAGGCC
AAAGCTTGTTTCCAGACCACGGCCCTCGATAGTAATGTTCAGCTCCAAGAAGCCATCAGA
CGCAGTGGGCAGCCGGAGGAGGAGCTCAACAGGCTCATGAAATTTGACATTCCCAACTTT
GTCAACACAGACCAGAACTCCTCCTTTGGGGAAGACGATCTCCTGATATCGGAACCACCT
ATTGTTCTAGAAAATAAGCCAGTTGCCCAGACCCCACACAAAGACTTGGATTGAGAAGCA
TGTTTTGTAAAGTGTATACCTGAAGAGGCTGGTCTGTCTTTGTATAGTACGAAATCTCCA
TTCACCAAAATTGTGTGCGTTTGTATATGAGAGACAGAGACAGAGAGACCAAAAGGCAAA
ATGACAGAGAAGAGAGCCCCCTGGGAAGAGAGCTGATTCAGCTGTTTTTACGCCCTCAAA
CACATATGGGGCTTTTGGGAGGGGGAGAACCAAGTAGTTACACTGTCTCATCTTCCTTGT
TGTTGAAGAACTTGGCCACATACTCGGCATCATCACTCTTGAATGGGGTTGACATATGGC
CTTCCTGTCTGCCACTGCTATGCTCTTCATTAGTGAGTTGCTTTTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               423-515, + strand, RNAz p=0.687667

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               423-515, + strand, RNAz p=0.687667

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-644, gnl|bosTau2|chr9 (36996480-36997119)
               

               
               1-644, gnl|Hg17|chr6 (84855629-84856509)
               

               
               1-644, gnl|Mm7|chr9 (87283746-87284448)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-644, gnl|bosTau2|chr9 (36996480-36997119)
               

               
               1-644, gnl|Hg17|chr6 (84855629-84856509)
               

               
               1-644, gnl|Mm7|chr9 (87283746-87284448)

	1-644, gnl\|bosTau2\|chr9 (36996480-36997119)
	1-644, gnl\|Hg17\|chr6 (84855629-84856509)
	1-644, gnl\|Mm7\|chr9 (87283746-87284448)