Non-Coding RNA Search

Ss1.1-Pla1-C0000045_N02.5

Sequence:


               
               GCCTCTTTACCCTGCACACTCATCTCTTCCACTAAGTGGTGCTATTGCTGCTTTTGCCTC
AGAGGTTGAAAACAAGGGAACTATGGTAGAGACTACCCTGAAGGAATCTCAGGGCAACCT
CTACCAATGGGGCCCCCTCCCTGGGATACCAAAAGACAGCAGTCCCCTCAGAGAGAACTT
TGGAAGTTTTTTGTGCCACAAGGAAAAATTGGATATGAAGGCTGAGGGACCTGAGCGACA
CACAGACTTCTTGCTTCCTCATGAGAGAGCTAGCCAGGATGGCAGTGGTTTCTCCTGCAT
TCTGAGCATGTTAGCAGATTCCACAAGTACACAGGAAAAAAGGCGACGTAGCTTCCCTGA
TATTGAGGATGAGGAGAAATTTCTCTATGGGGATGAAGAAGAGGATTTAAAGGCAGACTC
TCCACCAAAGGCCCTTGGGGGCTCTGAAATTGAAGTTATGAGGCAGAAGGCAAGCTCCCT
ACCCTCTTCAGCTCCAGCCGTAAAGCTAGAATCAATAGAAGAGACCAATCCAGAATATGC
CAAGATTCATGATTTGCTCAAGACCATAGGGCTGGATATTGGAGTAGCAGAAATTAGTAA
ACTGGCTGCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTCTTTACCCTGCACACTCATCTCTTCCACTAAGTGGTGCTATTGCTGCTTTTGCCTC
AGAGGTTGAAAACAAGGGAACTATGGTAGAGACTACCCTGAAGGAATCTCAGGGCAACCT
CTACCAATGGGGCCCCCTCCCTGGGATACCAAAAGACAGCAGTCCCCTCAGAGAGAACTT
TGGAAGTTTTTTGTGCCACAAGGAAAAATTGGATATGAAGGCTGAGGGACCTGAGCGACA
CACAGACTTCTTGCTTCCTCATGAGAGAGCTAGCCAGGATGGCAGTGGTTTCTCCTGCAT
TCTGAGCATGTTAGCAGATTCCACAAGTACACAGGAAAAAAGGCGACGTAGCTTCCCTGA
TATTGAGGATGAGGAGAAATTTCTCTATGGGGATGAAGAAGAGGATTTAAAGGCAGACTC
TCCACCAAAGGCCCTTGGGGGCTCTGAAATTGAAGTTATGAGGCAGAAGGCAAGCTCCCT
ACCCTCTTCAGCTCCAGCCGTAAAGCTAGAATCAATAGAAGAGACCAATCCAGAATATGC
CAAGATTCATGATTTGCTCAAGACCATAGGGCTGGATATTGGAGTAGCAGAAATTAGTAA
ACTGGCTGCACG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-197, - strand, RNAz p=0.997355
               

               
               398-517, - strand, RNAz p=0.93407

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-197, - strand, RNAz p=0.997355
               

               
               398-517, - strand, RNAz p=0.93407

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               12-142, - strand, RNAmicro p=0.999987

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               12-142, - strand, RNAmicro p=0.999987

Similar Transcript(s): 5 entry(ies)

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Similar Transcript(s): 5 entry(ies)

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               41-190, BP290761 Sugano cDNA library, lung fibroblast Homo sapiens cDNA 
(dbj|BP290761.1|), blast E-value=0, identity=91.33% 
               

               
               41-147, CJ485084 macaque testis cDNA library QtsA Macaca fascicularis cDNA 
(dbj|CJ485084.1|), blast E-value=5e-26, identity=89.72% 
               

               
               41-111, DA493609 FCBBF3 Homo sapiens cDNA clone FCBBF3005642 5', mRNA 
(dbj|DA493609.1|), blast E-value=7e-19, identity=92.96% 
               

               
               46-190, DA852879 PLACE7 Homo sapiens cDNA clone PLACE7002932 5', mRNA 
(dbj|DA852879.1|), blast E-value=1.99993e-41, identity=90.34% 
               

               
               66-190, 602370426F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb|BG256946.1|), 
blast E-value=3e-30, identity=89.68%

Similar Transcript(s): 5 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               41-190, BP290761 Sugano cDNA library, lung fibroblast Homo sapiens cDNA 
(dbj|BP290761.1|), blast E-value=0, identity=91.33% 
               

               
               41-147, CJ485084 macaque testis cDNA library QtsA Macaca fascicularis cDNA 
(dbj|CJ485084.1|), blast E-value=5e-26, identity=89.72% 
               

               
               41-111, DA493609 FCBBF3 Homo sapiens cDNA clone FCBBF3005642 5', mRNA 
(dbj|DA493609.1|), blast E-value=7e-19, identity=92.96% 
               

               
               46-190, DA852879 PLACE7 Homo sapiens cDNA clone PLACE7002932 5', mRNA 
(dbj|DA852879.1|), blast E-value=1.99993e-41, identity=90.34% 
               

               
               66-190, 602370426F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb|BG256946.1|), 
blast E-value=3e-30, identity=89.68%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-612, gnl|bosTau2|chr23 (17212075-17211462)
               

               
               2-612, gnl|Hg17|chr6 (43431819-43431209)
               

               
               2-612, gnl|Mm7|chr17 (44526357-44526955)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-612, gnl|bosTau2|chr23 (17212075-17211462)
               

               
               2-612, gnl|Hg17|chr6 (43431819-43431209)
               

               
               2-612, gnl|Mm7|chr17 (44526357-44526955)

	41-197, - strand, RNAz p=0.997355
	398-517, - strand, RNAz p=0.93407

	41-190, BP290761 Sugano cDNA library, lung fibroblast Homo sapiens cDNA (dbj\|BP290761.1\|), blast E-value=0, identity=91.33%
	41-147, CJ485084 macaque testis cDNA library QtsA Macaca fascicularis cDNA (dbj\|CJ485084.1\|), blast E-value=5e-26, identity=89.72%
	41-111, DA493609 FCBBF3 Homo sapiens cDNA clone FCBBF3005642 5', mRNA (dbj\|DA493609.1\|), blast E-value=7e-19, identity=92.96%
	46-190, DA852879 PLACE7 Homo sapiens cDNA clone PLACE7002932 5', mRNA (dbj\|DA852879.1\|), blast E-value=1.99993e-41, identity=90.34%
	66-190, 602370426F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb\|BG256946.1\|), blast E-value=3e-30, identity=89.68%

	2-612, gnl\|bosTau2\|chr23 (17212075-17211462)
	2-612, gnl\|Hg17\|chr6 (43431819-43431209)
	2-612, gnl\|Mm7\|chr17 (44526357-44526955)