Ss1.1-Pla1-C0000045_N02.5
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GCCTCTTTACCCTGCACACTCATCTCTTCCACTAAGTGGTGCTATTGCTGCTTTTGCCTC
AGAGGTTGAAAACAAGGGAACTATGGTAGAGACTACCCTGAAGGAATCTCAGGGCAACCT
CTACCAATGGGGCCCCCTCCCTGGGATACCAAAAGACAGCAGTCCCCTCAGAGAGAACTT
TGGAAGTTTTTTGTGCCACAAGGAAAAATTGGATATGAAGGCTGAGGGACCTGAGCGACA
CACAGACTTCTTGCTTCCTCATGAGAGAGCTAGCCAGGATGGCAGTGGTTTCTCCTGCAT
TCTGAGCATGTTAGCAGATTCCACAAGTACACAGGAAAAAAGGCGACGTAGCTTCCCTGA
TATTGAGGATGAGGAGAAATTTCTCTATGGGGATGAAGAAGAGGATTTAAAGGCAGACTC
TCCACCAAAGGCCCTTGGGGGCTCTGAAATTGAAGTTATGAGGCAGAAGGCAAGCTCCCT
ACCCTCTTCAGCTCCAGCCGTAAAGCTAGAATCAATAGAAGAGACCAATCCAGAATATGC
CAAGATTCATGATTTGCTCAAGACCATAGGGCTGGATATTGGAGTAGCAGAAATTAGTAA
ACTGGCTGCACG
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GCCTCTTTACCCTGCACACTCATCTCTTCCACTAAGTGGTGCTATTGCTGCTTTTGCCTC
AGAGGTTGAAAACAAGGGAACTATGGTAGAGACTACCCTGAAGGAATCTCAGGGCAACCT
CTACCAATGGGGCCCCCTCCCTGGGATACCAAAAGACAGCAGTCCCCTCAGAGAGAACTT
TGGAAGTTTTTTGTGCCACAAGGAAAAATTGGATATGAAGGCTGAGGGACCTGAGCGACA
CACAGACTTCTTGCTTCCTCATGAGAGAGCTAGCCAGGATGGCAGTGGTTTCTCCTGCAT
TCTGAGCATGTTAGCAGATTCCACAAGTACACAGGAAAAAAGGCGACGTAGCTTCCCTGA
TATTGAGGATGAGGAGAAATTTCTCTATGGGGATGAAGAAGAGGATTTAAAGGCAGACTC
TCCACCAAAGGCCCTTGGGGGCTCTGAAATTGAAGTTATGAGGCAGAAGGCAAGCTCCCT
ACCCTCTTCAGCTCCAGCCGTAAAGCTAGAATCAATAGAAGAGACCAATCCAGAATATGC
CAAGATTCATGATTTGCTCAAGACCATAGGGCTGGATATTGGAGTAGCAGAAATTAGTAA
ACTGGCTGCACG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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12-142, - strand, RNAmicro p=0.999987 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
12-142, - strand, RNAmicro p=0.999987 |
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41-190, BP290761 Sugano cDNA library, lung fibroblast Homo sapiens cDNA
(dbj|BP290761.1|), blast E-value=0, identity=91.33% |
|
41-147, CJ485084 macaque testis cDNA library QtsA Macaca fascicularis cDNA
(dbj|CJ485084.1|), blast E-value=5e-26, identity=89.72% |
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41-111, DA493609 FCBBF3 Homo sapiens cDNA clone FCBBF3005642 5', mRNA
(dbj|DA493609.1|), blast E-value=7e-19, identity=92.96% |
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46-190, DA852879 PLACE7 Homo sapiens cDNA clone PLACE7002932 5', mRNA
(dbj|DA852879.1|), blast E-value=1.99993e-41, identity=90.34% |
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66-190, 602370426F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb|BG256946.1|),
blast E-value=3e-30, identity=89.68% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
41-190, BP290761 Sugano cDNA library, lung fibroblast Homo sapiens cDNA
(dbj|BP290761.1|), blast E-value=0, identity=91.33% |
|
41-147, CJ485084 macaque testis cDNA library QtsA Macaca fascicularis cDNA
(dbj|CJ485084.1|), blast E-value=5e-26, identity=89.72% |
|
41-111, DA493609 FCBBF3 Homo sapiens cDNA clone FCBBF3005642 5', mRNA
(dbj|DA493609.1|), blast E-value=7e-19, identity=92.96% |
|
46-190, DA852879 PLACE7 Homo sapiens cDNA clone PLACE7002932 5', mRNA
(dbj|DA852879.1|), blast E-value=1.99993e-41, identity=90.34% |
|
66-190, 602370426F1 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb|BG256946.1|),
blast E-value=3e-30, identity=89.68% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map