Non-Coding RNA Search

Ss1.1-Pla1-C0000046_H14.5

Sequence:


               
               GAGCCGGAGCGCACTGAGTCCCCGGGCGCNCCCTCGCCGCCGCCAGCGCCGTTCCGCCTC
CATCCGCCCGCCGCCGCCGCCCGGCCCCGGAGCACGCCGGCCCCGCGCGCGCCTCGAGGC
CGAGTCAAGGTGTGAGATGCACAATGCGAAACCTAGGCCCCAGCTTTTGCACCATGATGC
ACAGGGTTGTACTTTTTGTACTGAACTGATAGGTGGCCTAGTGGTTATGCCCTGTACTAC
CATTTTGAGGATCTGGACTCCGTTCCTGCCTTGCTCTTTGGACCACATTGTCAATTCACA
CCGGACTTTAAACAGTTCGAACTTAATGACTTTTATTTGAAAAACACTACATGGGAGGAT
GTAGGACTGTGGGACCCTTCACTTACAAAAAACCAGGACTATCGGACAAAACCTTTTTGC
TGCAGCGCTTGCCCATTTTCTTCAAAATTTTTCTCTGCCTACAAAAGTCATTTCCGGAAT
GTCCATAGTGAAGACTTTGAAAATAGGATTCTCTTTAATTGCCCCTACTGTACCTTCAAT
GCAGACAAAAAGACTTTGGAAACACACATTAAAATATTTCATGCTCCAAACGCCAGCGCA
CCAAGTAGCAGCCTCAGCACTTTCAAAGATAAAAGCAAAAACGATGGCCTTAAACCTAAG
CAGGCTGACAGTGTAGAGCAAGCTGTTTATTACTGTAAGAAGTGCACTTACCGAGATCCT
CTTTATGAAATAGTTAGGAAGCACATTTACAGGGAACATTTTCAGCATGTGGCAGCACCT
TACATAGCAAAGGCAGGTGAAAAATCACTCAATGGTGCAGTCCCCTTAGGCTCAAACGCC
CGGGAAGAAAGTAGTATTCACTGCAAGCGATGCCTTTTCATGCCAAAGTCCTACGAAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCGGAGCGCACTGAGTCCCCGGGCGCNCCCTCGCCGCCGCCAGCGCCGTTCCGCCTC
CATCCGCCCGCCGCCGCCGCCCGGCCCCGGAGCACGCCGGCCCCGCGCGCGCCTCGAGGC
CGAGTCAAGGTGTGAGATGCACAATGCGAAACCTAGGCCCCAGCTTTTGCACCATGATGC
ACAGGGTTGTACTTTTTGTACTGAACTGATAGGTGGCCTAGTGGTTATGCCCTGTACTAC
CATTTTGAGGATCTGGACTCCGTTCCTGCCTTGCTCTTTGGACCACATTGTCAATTCACA
CCGGACTTTAAACAGTTCGAACTTAATGACTTTTATTTGAAAAACACTACATGGGAGGAT
GTAGGACTGTGGGACCCTTCACTTACAAAAAACCAGGACTATCGGACAAAACCTTTTTGC
TGCAGCGCTTGCCCATTTTCTTCAAAATTTTTCTCTGCCTACAAAAGTCATTTCCGGAAT
GTCCATAGTGAAGACTTTGAAAATAGGATTCTCTTTAATTGCCCCTACTGTACCTTCAAT
GCAGACAAAAAGACTTTGGAAACACACATTAAAATATTTCATGCTCCAAACGCCAGCGCA
CCAAGTAGCAGCCTCAGCACTTTCAAAGATAAAAGCAAAAACGATGGCCTTAAACCTAAG
CAGGCTGACAGTGTAGAGCAAGCTGTTTATTACTGTAAGAAGTGCACTTACCGAGATCCT
CTTTATGAAATAGTTAGGAAGCACATTTACAGGGAACATTTTCAGCATGTGGCAGCACCT
TACATAGCAAAGGCAGGTGAAAAATCACTCAATGGTGCAGTCCCCTTAGGCTCAAACGCC
CGGGAAGAAAGTAGTATTCACTGCAAGCGATGCCTTTTCATGCCAAAGTCCTACGAAGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               128-246, + strand, RNAz p=0.976756
               

               
               782-900, - strand, RNAz p=0.621454

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-246, + strand, RNAz p=0.976756
               

               
               782-900, - strand, RNAz p=0.621454

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_015339, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015339, +

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               128-304, gnl|bosTau2|chr13 (59115969-59116145)
               

               
               128-304, gnl|canFam2|chr24 (40225096-40225588)
               

               
               128-304, gnl|dasNov1|scaffold_33255 (1977-1520)
               

               
               128-304, gnl|echTel1|scaffold_283632 (40505-40007)
               

               
               128-304, gnl|hg17|chr20 (48978354-48978854)
               

               
               128-304, gnl|Hg17|chr20 (48978771-48978594)
               

               
               128-304, gnl|loxAfr1|scaffold_114708 (7963-7466)
               

               
               128-304, gnl|mm7|chr2 (167997028-167997517)
               

               
               128-304, gnl|Mm7|chr2 (167997430-167997253)
               

               
               128-304, gnl|monDom2|scaffold_1 (162823253-162823711)
               

               
               128-304, gnl|oryCun1|scaffold_204453 (45914-46408)
               

               
               128-304, gnl|panTro1|chr21 (51717020-51717520)
               

               
               128-304, gnl|rheMac2|chr10 (13532347-13531849)
               

               
               128-304, gnl|rn3|chr3 (159275985-159276458)
               


               
               395-900, gnl|bosTau2|chr13 (59139657-59140162)
               

               
               395-900, gnl|Hg17|chr20 (48944458-48943953)
               

               
               395-900, gnl|Mm7|chr2 (167977828-167977323)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               128-304, gnl|bosTau2|chr13 (59115969-59116145)
               

               
               128-304, gnl|canFam2|chr24 (40225096-40225588)
               

               
               128-304, gnl|dasNov1|scaffold_33255 (1977-1520)
               

               
               128-304, gnl|echTel1|scaffold_283632 (40505-40007)
               

               
               128-304, gnl|hg17|chr20 (48978354-48978854)
               

               
               128-304, gnl|Hg17|chr20 (48978771-48978594)
               

               
               128-304, gnl|loxAfr1|scaffold_114708 (7963-7466)
               

               
               128-304, gnl|mm7|chr2 (167997028-167997517)
               

               
               128-304, gnl|Mm7|chr2 (167997430-167997253)
               

               
               128-304, gnl|monDom2|scaffold_1 (162823253-162823711)
               

               
               128-304, gnl|oryCun1|scaffold_204453 (45914-46408)
               

               
               128-304, gnl|panTro1|chr21 (51717020-51717520)
               

               
               128-304, gnl|rheMac2|chr10 (13532347-13531849)
               

               
               128-304, gnl|rn3|chr3 (159275985-159276458)
               


               
               395-900, gnl|bosTau2|chr13 (59139657-59140162)
               

               
               395-900, gnl|Hg17|chr20 (48944458-48943953)
               

               
               395-900, gnl|Mm7|chr2 (167977828-167977323)

	128-246, + strand, RNAz p=0.976756
	782-900, - strand, RNAz p=0.621454

	128-304, gnl\|bosTau2\|chr13 (59115969-59116145)
	128-304, gnl\|canFam2\|chr24 (40225096-40225588)
	128-304, gnl\|dasNov1\|scaffold_33255 (1977-1520)
	128-304, gnl\|echTel1\|scaffold_283632 (40505-40007)
	128-304, gnl\|hg17\|chr20 (48978354-48978854)
	128-304, gnl\|Hg17\|chr20 (48978771-48978594)
	128-304, gnl\|loxAfr1\|scaffold_114708 (7963-7466)
	128-304, gnl\|mm7\|chr2 (167997028-167997517)
	128-304, gnl\|Mm7\|chr2 (167997430-167997253)
	128-304, gnl\|monDom2\|scaffold_1 (162823253-162823711)
	128-304, gnl\|oryCun1\|scaffold_204453 (45914-46408)
	128-304, gnl\|panTro1\|chr21 (51717020-51717520)
	128-304, gnl\|rheMac2\|chr10 (13532347-13531849)
	128-304, gnl\|rn3\|chr3 (159275985-159276458)

	395-900, gnl\|bosTau2\|chr13 (59139657-59140162)
	395-900, gnl\|Hg17\|chr20 (48944458-48943953)
	395-900, gnl\|Mm7\|chr2 (167977828-167977323)