Non-Coding RNA Search

Ss1.1-Pla1-C0000048_M20.5

Sequence:


               
               TGGAATGGGGTAAGAGCAAACCTTTTCTCCTTTTACCTAATTTTGTTTCATCCATAGGAT
TTTCAATGGAAAGAAGGGACTGAAAGACATAAGAAATTTATTTCTGCATTTCCATGGATA
ATCTGATGAGCCCAAGCCATCTTCCAAAACATGGAAATGTCATCTCTGTGGCATATATAT
AAGTGGCAGTTTGCTTTTTTCCCTGCCAGTCTACTTGGTTGGGTTGGGGAGAACAAAGAA
TGGTTTTGAAACTAGAGCTTTCAGTTCCCTTCATGGTTTCCAGAGGTCAAAAGCCTCTGT
GGGTAATAGACTTGGGATGGAACACACACAACCCTTCTCTAACAACCCTAGGTTTTTAAC
TAATTGCCTCTGAATGGTTGTCTTGAAATACCTGGTGTATATACTGCAGAAAAGGAATGC
AGCTGTTTTCCACAGTGTTTGTCCCCAACTTCTGTTTGTACTTGGAACTGTTGAACATAA
TGATGAAGAGCTTGGTCCCTCAGGCCATGGGTTTAAGGCTTGAGGTGCACCTGGTACACA
GAAAATTCCAATAACTTTTTGCAGAGTAATGTATGTACTTATAGAATCACTCTCCCCATT
GGAGATTTTGAGAAGTCTAAATCGGTTTGACCATTTTGATTGATGGCACAATCTGGTTTA
GAAAACTTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAATGGGGTAAGAGCAAACCTTTTCTCCTTTTACCTAATTTTGTTTCATCCATAGGAT
TTTCAATGGAAAGAAGGGACTGAAAGACATAAGAAATTTATTTCTGCATTTCCATGGATA
ATCTGATGAGCCCAAGCCATCTTCCAAAACATGGAAATGTCATCTCTGTGGCATATATAT
AAGTGGCAGTTTGCTTTTTTCCCTGCCAGTCTACTTGGTTGGGTTGGGGAGAACAAAGAA
TGGTTTTGAAACTAGAGCTTTCAGTTCCCTTCATGGTTTCCAGAGGTCAAAAGCCTCTGT
GGGTAATAGACTTGGGATGGAACACACACAACCCTTCTCTAACAACCCTAGGTTTTTAAC
TAATTGCCTCTGAATGGTTGTCTTGAAATACCTGGTGTATATACTGCAGAAAAGGAATGC
AGCTGTTTTCCACAGTGTTTGTCCCCAACTTCTGTTTGTACTTGGAACTGTTGAACATAA
TGATGAAGAGCTTGGTCCCTCAGGCCATGGGTTTAAGGCTTGAGGTGCACCTGGTACACA
GAAAATTCCAATAACTTTTTGCAGAGTAATGTATGTACTTATAGAATCACTCTCCCCATT
GGAGATTTTGAGAAGTCTAAATCGGTTTGACCATTTTGATTGATGGCACAATCTGGTTTA
GAAAACTTTGTT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               79-197, - strand, RNAz p=0.85481
               

               
               238-357, - strand, RNAz p=0.696683
               

               
               554-672, + strand, RNAz p=0.54361

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-197, - strand, RNAz p=0.85481
               

               
               238-357, - strand, RNAz p=0.696683
               

               
               554-672, + strand, RNAz p=0.54361

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-672, gnl|bosTau2|chr17 (39324859-39325523)
               

               
               1-672, gnl|Hg17|chr22 (28009321-28010001)
               

               
               1-672, gnl|Mm7|chr11 (5034264-5033623)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-672, gnl|bosTau2|chr17 (39324859-39325523)
               

               
               1-672, gnl|Hg17|chr22 (28009321-28010001)
               

               
               1-672, gnl|Mm7|chr11 (5034264-5033623)

	79-197, - strand, RNAz p=0.85481
	238-357, - strand, RNAz p=0.696683
	554-672, + strand, RNAz p=0.54361

	1-672, gnl\|bosTau2\|chr17 (39324859-39325523)
	1-672, gnl\|Hg17\|chr22 (28009321-28010001)
	1-672, gnl\|Mm7\|chr11 (5034264-5033623)