Non-Coding RNA Search

Ss1.1-Pla1-C0000934_A09.5

Sequence:


               
               AGTATTTTCCAAAGACTGACAGGGTCAGCTGCTCGGGGAATGTGGCCGGTGACCTCCCTG
ATGGATGACCGTCCTGCAGGCTGCTTCCAAGTCAGCTGAAAGCATGAAAAAGGAAGCTTA
TCAAACAAGAACTTAGAGGAGAAATTGACGGTCTCTCCTGGTGACTCTGAAGCCAAACCT
CTGATCTTCACATTTGTCCCCACTGTCAGAAGACTACCAACCCACTCCCAGTTGGGTGAC
ACCTCTAAGTTCCTTGTTAAAATTCCTGAGGAACCAAGTGATAAGACTCCAGAAACTATA
AATAGGTCTCACTTCAATGAGTACTTGACCTTGAATGCTGGGAGCCAACAGGAGAGAGAC
CAAGGAACACTGACTGATCCTTTAGAGGTCGAGGGCAAGACTACACAAGGAAGAGGATTT
AAAGCAAACGAACCTCAAGGGATGCAGCAAAGTGACCTCTTCAAAGCTGAATATGTCTTT
ATTGTGGACTCTGAAGGGGAAGAAGAAGCTACAACTAGCAAAAGTGAACAAGGCCCCCCG
AGAGCGATGAGCACCACAGCTGCTCGGCCCACATCCCTAGCCATCTCATCCAGCCTGGCC
TCTGACTCTGTGCGCCCCAAAACACGGGGGGCAGACCTCCAGGCCCCATCACATCCTGAA
ATGCCTCATGGGATGGCTCCTCAGCAAAAACATGGGCAGGCACTAGATGAACCAGTCAAG
ACTGAGGGCATCTCCAAGGACAACACCTTAGACCCACCTCTGGAGCATTCTTCTGATTCT
CCTTCAAGTTCTCTACAGACATTGTTGAGTTCTGACTCAATCAAAATACCTACAACTCTC
CCGAGAGCGGCTGGTCGAGAAACCAAATATACAAAGCCTGAAGTTTTCTGAAACGCTGGT
GCTAATCACTTGCTAGATTTAACCTTTACCAGGTTTAACCCATATTTTTGCCGTCTTAGT
GTTTCCCTTATGGACTAAAAAAAGTTTCCTGCAGGCGTGTAACATCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTATTTTCCAAAGACTGACAGGGTCAGCTGCTCGGGGAATGTGGCCGGTGACCTCCCTG
ATGGATGACCGTCCTGCAGGCTGCTTCCAAGTCAGCTGAAAGCATGAAAAAGGAAGCTTA
TCAAACAAGAACTTAGAGGAGAAATTGACGGTCTCTCCTGGTGACTCTGAAGCCAAACCT
CTGATCTTCACATTTGTCCCCACTGTCAGAAGACTACCAACCCACTCCCAGTTGGGTGAC
ACCTCTAAGTTCCTTGTTAAAATTCCTGAGGAACCAAGTGATAAGACTCCAGAAACTATA
AATAGGTCTCACTTCAATGAGTACTTGACCTTGAATGCTGGGAGCCAACAGGAGAGAGAC
CAAGGAACACTGACTGATCCTTTAGAGGTCGAGGGCAAGACTACACAAGGAAGAGGATTT
AAAGCAAACGAACCTCAAGGGATGCAGCAAAGTGACCTCTTCAAAGCTGAATATGTCTTT
ATTGTGGACTCTGAAGGGGAAGAAGAAGCTACAACTAGCAAAAGTGAACAAGGCCCCCCG
AGAGCGATGAGCACCACAGCTGCTCGGCCCACATCCCTAGCCATCTCATCCAGCCTGGCC
TCTGACTCTGTGCGCCCCAAAACACGGGGGGCAGACCTCCAGGCCCCATCACATCCTGAA
ATGCCTCATGGGATGGCTCCTCAGCAAAAACATGGGCAGGCACTAGATGAACCAGTCAAG
ACTGAGGGCATCTCCAAGGACAACACCTTAGACCCACCTCTGGAGCATTCTTCTGATTCT
CCTTCAAGTTCTCTACAGACATTGTTGAGTTCTGACTCAATCAAAATACCTACAACTCTC
CCGAGAGCGGCTGGTCGAGAAACCAAATATACAAAGCCTGAAGTTTTCTGAAACGCTGGT
GCTAATCACTTGCTAGATTTAACCTTTACCAGGTTTAACCCATATTTTTGCCGTCTTAGT
GTTTCCCTTATGGACTAAAAAAAGTTTCCTGCAGGCGTGTAACATCGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55626818|ref|XP_518549.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55626818|ref|XP_518549.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-102, gnl|bosTau2|chr7 (10353064-10353164)
               

               
               1-102, gnl|Hg17|chr6 (53983712-53983813)
               

               
               1-102, gnl|Mm7|chr9 (77390399-77390299)
               


               
               306-700, gnl|bosTau2|chr7 (10497615-10498009)
               

               
               306-700, gnl|Hg17|chr6 (54097229-54097623)
               

               
               306-700, gnl|Mm7|chr9 (77277176-77276782)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-102, gnl|bosTau2|chr7 (10353064-10353164)
               

               
               1-102, gnl|Hg17|chr6 (53983712-53983813)
               

               
               1-102, gnl|Mm7|chr9 (77390399-77390299)
               


               
               306-700, gnl|bosTau2|chr7 (10497615-10498009)
               

               
               306-700, gnl|Hg17|chr6 (54097229-54097623)
               

               
               306-700, gnl|Mm7|chr9 (77277176-77276782)

	1-102, gnl\|bosTau2\|chr7 (10353064-10353164)
	1-102, gnl\|Hg17\|chr6 (53983712-53983813)
	1-102, gnl\|Mm7\|chr9 (77390399-77390299)

	306-700, gnl\|bosTau2\|chr7 (10497615-10498009)
	306-700, gnl\|Hg17\|chr6 (54097229-54097623)
	306-700, gnl\|Mm7\|chr9 (77277176-77276782)