Ss1.1-Pla1-C0000934_D11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTACAAATAGATCACTTGGTTTTTGTAGTCCATGGGATCGGACCAGCTTGTGATCTCC GCTTTCGAAGCATTGTACAGTGTGTTAATGATTTTCGCAGTGTTTCTTTGAACCTGCTGC AGACACATTTCAAGAAAGCCCATGAAAATCATCAGATTGGGAGGGTAGAGTTTCTCCCAG TCAACTGGCACAGTCCTTTACATTCCACTGGTGTGGATGTAGATCTGCAGCGAATAACCC TGCCCAGCATTAACCGCCTAAGGCACTTCACCAACAACACGATTCTGGATGTCTTCTTCT ACAATAGCCCCACCTACTGTCAGACTATTGTGGACACAGTTGCTTCTGAAATGAACAGAA TATATAAGCTTTTTCTGCAGAGGAACCCAGATTTCAAAGGAGGTGTTTCCATTGCTGGTC ATAGTTTAGGTTCGCTTATATTGTTTGATATCCTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTACAAATAGATCACTTGGTTTTTGTAGTCCATGGGATCGGACCAGCTTGTGATCTCC GCTTTCGAAGCATTGTACAGTGTGTTAATGATTTTCGCAGTGTTTCTTTGAACCTGCTGC AGACACATTTCAAGAAAGCCCATGAAAATCATCAGATTGGGAGGGTAGAGTTTCTCCCAG TCAACTGGCACAGTCCTTTACATTCCACTGGTGTGGATGTAGATCTGCAGCGAATAACCC TGCCCAGCATTAACCGCCTAAGGCACTTCACCAACAACACGATTCTGGATGTCTTCTTCT ACAATAGCCCCACCTACTGTCAGACTATTGTGGACACAGTTGCTTCTGAAATGAACAGAA TATATAAGCTTTTTCTGCAGAGGAACCCAGATTTCAAAGGAGGTGTTTCCATTGCTGGTC ATAGTTTAGGTTCGCTTATATTGTTTGATATCCTAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 84-202, + strand, RNAz p=0.665779 | |
| 300-419, - strand, RNAz p=0.621837 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 84-202, + strand, RNAz p=0.665779 | |
| 300-419, - strand, RNAz p=0.621837 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC010504, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 84-220, gnl|bosTau2|chr27 (21274721-21274857) | |
| 84-220, gnl|canFam2|chr16 (30204987-30204833) | |
| 84-220, gnl|danRer3|chr10 (13870466-13870304) | |
| 84-220, gnl|echTel1|scaffold_311543 (90458-90303) | |
| 84-220, gnl|fr1|chrUn (1491451-1491612) | |
| 84-220, gnl|galGal2|chrUn (466000-466154) | |
| 84-220, gnl|hg17|chr8 (38218913-38219068) | |
| 84-220, gnl|Hg17|chr8 (38218924-38219060) | |
| 84-220, gnl|loxAfr1|scaffold_39856 (19918-20072) | |
| 84-220, gnl|mm7|chr8 (24503454-24503299) | |
| 84-220, gnl|Mm7|chr8 (24503441-24503305) | |
| 84-220, gnl|monDom2|scaffold_1 (84661143-84660983) | |
| 84-220, gnl|oryCun1|scaffold_210124 (20638-20483) | |
| 84-220, gnl|panTro1|chr7 (39600975-39601130) | |
| 84-220, gnl|rheMac2|chr8 (38695232-38695387) | |
| 84-220, gnl|rn3|chr16 (70701529-70701684) | |
| 84-220, gnl|tetNig1|chr12 (6056024-6056185) | |
| 84-220, gnl|xenTro1|scaffold_190 (1658862-1659024) | |
| 221-431, gnl|bosTau2|chr27 (21275202-21275412) | |
| 221-431, gnl|canFam2|chr16 (30202168-30201909) | |
| 221-431, gnl|danRer3|chr10 (13868609-13868352) | |
| 221-431, gnl|dasNov1|scaffold_178861 (305-54) | |
| 221-431, gnl|echTel1|scaffold_311543 (85359-85106) | |
| 221-431, gnl|fr1|chrUn (1491667-1491904) | |
| 221-431, gnl|galGal2|chrUn (466364-466603) | |
| 221-431, gnl|hg17|chr8 (38222379-38222630) | |
| 221-431, gnl|Hg17|chr8 (38222417-38222627) | |
| 221-431, gnl|loxAfr1|scaffold_35649 (930-1181) | |
| 221-431, gnl|mm7|chr8 (24498342-24498085) | |
| 221-431, gnl|Mm7|chr8 (24498296-24498086) | |
| 221-431, gnl|monDom2|scaffold_1 (84659409-84659159) | |
| 221-431, gnl|oryCun1|scaffold_210124 (16774-16515) | |
| 221-431, gnl|panTro1|chr7 (39604449-39604700) | |
| 221-431, gnl|rheMac2|chr8 (38699097-38699348) | |
| 221-431, gnl|rn3|chr16 (70706233-70706488) | |
| 221-431, gnl|tetNig1|chr12 (6056253-6056479) | |
| 221-431, gnl|xenTro1|scaffold_190 (1659336-1659570) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 84-220, gnl|bosTau2|chr27 (21274721-21274857) | |
| 84-220, gnl|canFam2|chr16 (30204987-30204833) | |
| 84-220, gnl|danRer3|chr10 (13870466-13870304) | |
| 84-220, gnl|echTel1|scaffold_311543 (90458-90303) | |
| 84-220, gnl|fr1|chrUn (1491451-1491612) | |
| 84-220, gnl|galGal2|chrUn (466000-466154) | |
| 84-220, gnl|hg17|chr8 (38218913-38219068) | |
| 84-220, gnl|Hg17|chr8 (38218924-38219060) | |
| 84-220, gnl|loxAfr1|scaffold_39856 (19918-20072) | |
| 84-220, gnl|mm7|chr8 (24503454-24503299) | |
| 84-220, gnl|Mm7|chr8 (24503441-24503305) | |
| 84-220, gnl|monDom2|scaffold_1 (84661143-84660983) | |
| 84-220, gnl|oryCun1|scaffold_210124 (20638-20483) | |
| 84-220, gnl|panTro1|chr7 (39600975-39601130) | |
| 84-220, gnl|rheMac2|chr8 (38695232-38695387) | |
| 84-220, gnl|rn3|chr16 (70701529-70701684) | |
| 84-220, gnl|tetNig1|chr12 (6056024-6056185) | |
| 84-220, gnl|xenTro1|scaffold_190 (1658862-1659024) | |
| 221-431, gnl|bosTau2|chr27 (21275202-21275412) | |
| 221-431, gnl|canFam2|chr16 (30202168-30201909) | |
| 221-431, gnl|danRer3|chr10 (13868609-13868352) | |
| 221-431, gnl|dasNov1|scaffold_178861 (305-54) | |
| 221-431, gnl|echTel1|scaffold_311543 (85359-85106) | |
| 221-431, gnl|fr1|chrUn (1491667-1491904) | |
| 221-431, gnl|galGal2|chrUn (466364-466603) | |
| 221-431, gnl|hg17|chr8 (38222379-38222630) | |
| 221-431, gnl|Hg17|chr8 (38222417-38222627) | |
| 221-431, gnl|loxAfr1|scaffold_35649 (930-1181) | |
| 221-431, gnl|mm7|chr8 (24498342-24498085) | |
| 221-431, gnl|Mm7|chr8 (24498296-24498086) | |
| 221-431, gnl|monDom2|scaffold_1 (84659409-84659159) | |
| 221-431, gnl|oryCun1|scaffold_210124 (16774-16515) | |
| 221-431, gnl|panTro1|chr7 (39604449-39604700) | |
| 221-431, gnl|rheMac2|chr8 (38699097-38699348) | |
| 221-431, gnl|rn3|chr16 (70706233-70706488) | |
| 221-431, gnl|tetNig1|chr12 (6056253-6056479) | |
| 221-431, gnl|xenTro1|scaffold_190 (1659336-1659570) |