Non-Coding RNA Search

Ss1.1-Pla1-C0000934_E24.5

Sequence:


               
               CAATAATAATAGAAACCATCCACTTCGTACATACAAGGACACTCCAAGATGATTCAGAAT
ACACGAGAGGACAGAACTGAGAGCATGGGAGTCGCGATGGCTGCAGGGTATTTTTTTTAG
CTCAGTTTCCTCTCGTTGACTCGACGATGCAACAGTAAGGCCCTTTCTGCTGTATTACCT
TTGCCCAGGTGTCTGAAATAGGACGCAACTCAAGAGAGTGTGGCCTTGGGCTCCGCAATG
CTCTGGGAACCCTTGGGGATTAAGGAGGAGAGGGTGCGCTGACTCTTTGGGACCTGGTGG
GTGTCATGCCTGAGGGGTTTTCCGCAGGGAGCTGGGCTGGGGAAGGTGGGCCCGCTGGGA
GCTAGTGCCTCCTTTCCAGCGAGGCCAGCCCTGGTTCTCTCGTTGCGCTGGCTCCCCCCA
GGAGCCTTCCCCTCCGCAGCACCCACCTGCCTGGAGACAGAGGGAGTGTTGAGGCCTCAC
CTCTGCCAGCTGCCAGCTTCCCCGGAACAAGAGGTTCATTCAGCAATGAGCGTTTACTCA
TTTTCTTTTTTCTTCATGAAGACCTCTTTAGCCCTGCCTATAAAAATAGTTCAGACCATT
TCAAGCCTTGGTGAGACAGGGCAGTGTCTAACACCCTCAGGCCGTCGCCACTGCTGCCCA
TTCCTGGCTTCTCCTCTGAACGTTGTTTATAAACCTTGGAATGGCTGAGGACACGGGAAG
ATGGATCTTTGGGAGCAGACTTTTTTTTTCTTTTTTGGTGGAGGGGCAGGATTCCTGAGT
CCCATGGAGAGGGAAAAAGAAGAGACAGATGTGCAGATCTCTGTAATAGCTACAGGTTAT
CACAAAGTTATTACTAAGGTTAAGAGATGTGGGTAAACACTAGCCTTTTGTTCCTGTATG
TGATGCACTCACTTGAAAATAAGTAACAAAACGAACAGGAAAAAGTGTTTGTCTGCCAGC
TCTCTCAACCCGGGAGCTATGCCCTAGGCTGGTCTAAGGAGGCAGCTGCTGACCAAACCC
CTAACAGAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATAATAATAGAAACCATCCACTTCGTACATACAAGGACACTCCAAGATGATTCAGAAT
ACACGAGAGGACAGAACTGAGAGCATGGGAGTCGCGATGGCTGCAGGGTATTTTTTTTAG
CTCAGTTTCCTCTCGTTGACTCGACGATGCAACAGTAAGGCCCTTTCTGCTGTATTACCT
TTGCCCAGGTGTCTGAAATAGGACGCAACTCAAGAGAGTGTGGCCTTGGGCTCCGCAATG
CTCTGGGAACCCTTGGGGATTAAGGAGGAGAGGGTGCGCTGACTCTTTGGGACCTGGTGG
GTGTCATGCCTGAGGGGTTTTCCGCAGGGAGCTGGGCTGGGGAAGGTGGGCCCGCTGGGA
GCTAGTGCCTCCTTTCCAGCGAGGCCAGCCCTGGTTCTCTCGTTGCGCTGGCTCCCCCCA
GGAGCCTTCCCCTCCGCAGCACCCACCTGCCTGGAGACAGAGGGAGTGTTGAGGCCTCAC
CTCTGCCAGCTGCCAGCTTCCCCGGAACAAGAGGTTCATTCAGCAATGAGCGTTTACTCA
TTTTCTTTTTTCTTCATGAAGACCTCTTTAGCCCTGCCTATAAAAATAGTTCAGACCATT
TCAAGCCTTGGTGAGACAGGGCAGTGTCTAACACCCTCAGGCCGTCGCCACTGCTGCCCA
TTCCTGGCTTCTCCTCTGAACGTTGTTTATAAACCTTGGAATGGCTGAGGACACGGGAAG
ATGGATCTTTGGGAGCAGACTTTTTTTTTCTTTTTTGGTGGAGGGGCAGGATTCCTGAGT
CCCATGGAGAGGGAAAAAGAAGAGACAGATGTGCAGATCTCTGTAATAGCTACAGGTTAT
CACAAAGTTATTACTAAGGTTAAGAGATGTGGGTAAACACTAGCCTTTTGTTCCTGTATG
TGATGCACTCACTTGAAAATAAGTAACAAAACGAACAGGAAAAAGTGTTTGTCTGCCAGC
TCTCTCAACCCGGGAGCTATGCCCTAGGCTGGTCTAAGGAGGCAGCTGCTGACCAAACCC
CTAACAGAGCCC

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               183-282, - strand, RNAz p=0.505249
               

               
               313-417, - strand, RNAz p=0.872578
               

               
               456-574, - strand, RNAz p=0.830721
               

               
               735-840, + strand, RNAz p=0.831664

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-282, - strand, RNAz p=0.505249
               

               
               313-417, - strand, RNAz p=0.872578
               

               
               456-574, - strand, RNAz p=0.830721
               

               
               735-840, + strand, RNAz p=0.831664

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               716-803, + strand, RNAmicro p=0.987801

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               716-803, + strand, RNAmicro p=0.987801

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1027, gnl|bosTau2|chr12 (34422884-34421852)
               

               
               1-1027, gnl|Hg17|chr10 (73440864-73441934)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1027, gnl|bosTau2|chr12 (34422884-34421852)
               

               
               1-1027, gnl|Hg17|chr10 (73440864-73441934)

	183-282, - strand, RNAz p=0.505249
	313-417, - strand, RNAz p=0.872578
	456-574, - strand, RNAz p=0.830721
	735-840, + strand, RNAz p=0.831664

	1-1027, gnl\|bosTau2\|chr12 (34422884-34421852)
	1-1027, gnl\|Hg17\|chr10 (73440864-73441934)