Non-Coding RNA Search

Ss1.1-Pla1-C0000934_M20.5

Sequence:


               
               CTCGAGCCGCTGTGAAAACATAAATCAGGAATTTGTGAAAATGAAAGATGAGAATGAGAC
ATTAAAGAGAAGCCTGGAGAATACTCAGAACCAAGTGAAAGCTGAGTACATCAGTCTAAG
AGAGCACGAGGAAAAGATGAGTGCTGTGAGGAAGAGCATGAAGAAGGTCCAGGACAGCAG
TGCTGAAGTATTAGCTAACTACAAAAAAGGCCAGGAGGAGATCGTGACTCTGCATGCTGA
GATCGAAGCCCAGAAAAGGGAACTCGACACAATACAAGAATGCATCAAGCTAAAATATGC
TCCGATTATCAGCTTTGAAGAGTGTGAGAGAAAATTTAAAGCCACCGAGAAAGAATTAAA
AGAACAGTTATCTGAGCAGACACAAAAGTGCAATGTCACTGAAGAAGAGGTCAAGAGATG
CAAGCAAGAGAATGACGAGTTAAAGAAGGAGATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCGAGCCGCTGTGAAAACATAAATCAGGAATTTGTGAAAATGAAAGATGAGAATGAGAC
ATTAAAGAGAAGCCTGGAGAATACTCAGAACCAAGTGAAAGCTGAGTACATCAGTCTAAG
AGAGCACGAGGAAAAGATGAGTGCTGTGAGGAAGAGCATGAAGAAGGTCCAGGACAGCAG
TGCTGAAGTATTAGCTAACTACAAAAAAGGCCAGGAGGAGATCGTGACTCTGCATGCTGA
GATCGAAGCCCAGAAAAGGGAACTCGACACAATACAAGAATGCATCAAGCTAAAATATGC
TCCGATTATCAGCTTTGAAGAGTGTGAGAGAAAATTTAAAGCCACCGAGAAAGAATTAAA
AGAACAGTTATCTGAGCAGACACAAAAGTGCAATGTCACTGAAGAAGAGGTCAAGAGATG
CAAGCAAGAGAATGACGAGTTAAAGAAGGAGATCTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               50-169, + strand, RNAz p=0.980793

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-169, + strand, RNAz p=0.980793

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               11-454, gnl|bosTau2|chr10 (12633107-12632664)
               

               
               11-454, gnl|canFam2|chr30 (37382963-37383586)
               

               
               11-454, gnl|danRer3|chr7 (26257359-26256736)
               

               
               11-454, gnl|dasNov1|scaffold_5259 (50286-49663)
               

               
               11-454, gnl|echTel1|scaffold_284189 (6480-7052)
               

               
               11-454, gnl|fr1|chrUn (228557648-228558233)
               

               
               11-454, gnl|galGal2|chr10 (20257213-20257833)
               

               
               11-454, gnl|hg17|chr15 (68746797-68747420)
               

               
               11-454, gnl|Hg17|chr15 (68747409-68746966)
               

               
               11-454, gnl|loxAfr1|scaffold_2422 (70174-69551)
               

               
               11-454, gnl|mm7|chr9 (60898553-60897930)
               

               
               11-454, gnl|Mm7|chr9 (60897939-60898382)
               

               
               11-454, gnl|monDom2|scaffold_12 (40035634-40035011)
               

               
               11-454, gnl|oryCun1|scaffold_173391 (13590-12967)
               

               
               11-454, gnl|panTro1|chr16 (69379302-69379925)
               

               
               11-454, gnl|rheMac2|chr7 (49314164-49314787)
               

               
               11-454, gnl|rn3|chr8 (64830033-64829410)
               

               
               11-454, gnl|tetNig1|chr5 (10369907-10369293)
               

               
               11-454, gnl|xenTro1|scaffold_5 (618372-619133)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-454, gnl|bosTau2|chr10 (12633107-12632664)
               

               
               11-454, gnl|canFam2|chr30 (37382963-37383586)
               

               
               11-454, gnl|danRer3|chr7 (26257359-26256736)
               

               
               11-454, gnl|dasNov1|scaffold_5259 (50286-49663)
               

               
               11-454, gnl|echTel1|scaffold_284189 (6480-7052)
               

               
               11-454, gnl|fr1|chrUn (228557648-228558233)
               

               
               11-454, gnl|galGal2|chr10 (20257213-20257833)
               

               
               11-454, gnl|hg17|chr15 (68746797-68747420)
               

               
               11-454, gnl|Hg17|chr15 (68747409-68746966)
               

               
               11-454, gnl|loxAfr1|scaffold_2422 (70174-69551)
               

               
               11-454, gnl|mm7|chr9 (60898553-60897930)
               

               
               11-454, gnl|Mm7|chr9 (60897939-60898382)
               

               
               11-454, gnl|monDom2|scaffold_12 (40035634-40035011)
               

               
               11-454, gnl|oryCun1|scaffold_173391 (13590-12967)
               

               
               11-454, gnl|panTro1|chr16 (69379302-69379925)
               

               
               11-454, gnl|rheMac2|chr7 (49314164-49314787)
               

               
               11-454, gnl|rn3|chr8 (64830033-64829410)
               

               
               11-454, gnl|tetNig1|chr5 (10369907-10369293)
               

               
               11-454, gnl|xenTro1|scaffold_5 (618372-619133)

	11-454, gnl\|bosTau2\|chr10 (12633107-12632664)
	11-454, gnl\|canFam2\|chr30 (37382963-37383586)
	11-454, gnl\|danRer3\|chr7 (26257359-26256736)
	11-454, gnl\|dasNov1\|scaffold_5259 (50286-49663)
	11-454, gnl\|echTel1\|scaffold_284189 (6480-7052)
	11-454, gnl\|fr1\|chrUn (228557648-228558233)
	11-454, gnl\|galGal2\|chr10 (20257213-20257833)
	11-454, gnl\|hg17\|chr15 (68746797-68747420)
	11-454, gnl\|Hg17\|chr15 (68747409-68746966)
	11-454, gnl\|loxAfr1\|scaffold_2422 (70174-69551)
	11-454, gnl\|mm7\|chr9 (60898553-60897930)
	11-454, gnl\|Mm7\|chr9 (60897939-60898382)
	11-454, gnl\|monDom2\|scaffold_12 (40035634-40035011)
	11-454, gnl\|oryCun1\|scaffold_173391 (13590-12967)
	11-454, gnl\|panTro1\|chr16 (69379302-69379925)
	11-454, gnl\|rheMac2\|chr7 (49314164-49314787)
	11-454, gnl\|rn3\|chr8 (64830033-64829410)
	11-454, gnl\|tetNig1\|chr5 (10369907-10369293)
	11-454, gnl\|xenTro1\|scaffold_5 (618372-619133)