Non-Coding RNA Search

Ss1.1-Pla1-C0000936_H08.5

Sequence:


               
               GGAATACAGACTAATTCCTTTCTCATCTAAACTTAACATTGCTGTGGAAGTTAATTTTTT
TAGCCTATTAAGATGCACTGACTGATATTAAAAGTTATTTTCATAAAACATATTCAAGGA
TACGTTTTGATTTAATGAAACTGGCTTACATATTTGAGAAGTGTTTGAAACTTTTGCCAT
GGCTGCAGGACTTATATTCTTTTTTGGGAGGGTGGGGGAAGACAGGGAGTGGTAAAGGGA
AAAGGTTAAAAATCCACCTGTGGTTGTGTGTTCTTCTTTTCTGTTTATCACTCTTATTAC
CTAGACTGTGAGAGGCTTTTTGCCTTCAGTCAGATTAAAAAGAGCAGGGCCTAACGTTGA
GTGACAGCACCTGCTTTTGATAAATAGGTTTTCTTGCTCTTCTTTTTTTCCTTCTTTTAT
CCCTTACCCCCTACCCCCAATCCTGCTTCAACACAATGGACTAATCAAGCATTCTGATCA
TAAGGCCCTCCATTTTCCTAATGTGTTTCAAAGAATCTTTTTAGGAAAAATGTCCAGATT
ATTCATCCACTTTTTTAGTATCTACTAACAACTCCTTTTTTTCTCTAGAGAGTTATGAAG
------------NTTGTCTGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATACAGACTAATTCCTTTCTCATCTAAACTTAACATTGCTGTGGAAGTTAATTTTTT
TAGCCTATTAAGATGCACTGACTGATATTAAAAGTTATTTTCATAAAACATATTCAAGGA
TACGTTTTGATTTAATGAAACTGGCTTACATATTTGAGAAGTGTTTGAAACTTTTGCCAT
GGCTGCAGGACTTATATTCTTTTTTGGGAGGGTGGGGGAAGACAGGGAGTGGTAAAGGGA
AAAGGTTAAAAATCCACCTGTGGTTGTGTGTTCTTCTTTTCTGTTTATCACTCTTATTAC
CTAGACTGTGAGAGGCTTTTTGCCTTCAGTCAGATTAAAAAGAGCAGGGCCTAACGTTGA
GTGACAGCACCTGCTTTTGATAAATAGGTTTTCTTGCTCTTCTTTTTTTCCTTCTTTTAT
CCCTTACCCCCTACCCCCAATCCTGCTTCAACACAATGGACTAATCAAGCATTCTGATCA
TAAGGCCCTCCATTTTCCTAATGTGTTTCAAAGAATCTTTTTAGGAAAAATGTCCAGATT
ATTCATCCACTTTTTTAGTATCTACTAACAACTCCTTTTTTTCTCTAGAGAGTTATGAAG
------------NTTGTCTGGAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               230-429, + strand, RNAz p=0.994705

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-429, + strand, RNAz p=0.994705

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               236-304, + strand, RNAmicro p=0.948963

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               236-304, + strand, RNAmicro p=0.948963

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               231-402, 728161 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB466078.1|), 
blast E-value=0, identity=97.09% 
               

               
               230-402, 4124109 BARC 8BOV Bos taurus cDNA clone 8BOV_30F04 5', mRNA 
(gb|CN789627.1|), blast E-value=0, identity=97.11% 
               

               
               230-402, 000803BCNA005744HT BCNA Bos taurus cDNA, mRNA sequence 
(gb|DY045426.1|), blast E-value=0, identity=97.11% 
               

               
               230-402, LB02756.CR_L09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE349812.1|), 
blast E-value=0, identity=97.11% 
               

               
               230-402, LB02940.CR_M21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351958.1|), 
blast E-value=0, identity=97.11% 
               

               
               230-402, LB02970.CR_K04 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE360207.1|), 
blast E-value=0, identity=97.11%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               231-402, 728161 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb|CB466078.1|), 
blast E-value=0, identity=97.09% 
               

               
               230-402, 4124109 BARC 8BOV Bos taurus cDNA clone 8BOV_30F04 5', mRNA 
(gb|CN789627.1|), blast E-value=0, identity=97.11% 
               

               
               230-402, 000803BCNA005744HT BCNA Bos taurus cDNA, mRNA sequence 
(gb|DY045426.1|), blast E-value=0, identity=97.11% 
               

               
               230-402, LB02756.CR_L09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE349812.1|), 
blast E-value=0, identity=97.11% 
               

               
               230-402, LB02940.CR_M21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351958.1|), 
blast E-value=0, identity=97.11% 
               

               
               230-402, LB02970.CR_K04 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE360207.1|), 
blast E-value=0, identity=97.11%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_018011, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_018011, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-600, gnl|bosTau2|chr12 (45269700-45269103)
               

               
               1-600, gnl|Hg17|chr13 (106009692-106009093)
               

               
               1-600, gnl|Mm7|chr8 (8653545-8652937)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-600, gnl|bosTau2|chr12 (45269700-45269103)
               

               
               1-600, gnl|Hg17|chr13 (106009692-106009093)
               

               
               1-600, gnl|Mm7|chr8 (8653545-8652937)

	231-402, 728161 MARC 6BOV Bos taurus cDNA 5', mRNA sequence (gb\|CB466078.1\|), blast E-value=0, identity=97.09%
	230-402, 4124109 BARC 8BOV Bos taurus cDNA clone 8BOV_30F04 5', mRNA (gb\|CN789627.1\|), blast E-value=0, identity=97.11%
	230-402, 000803BCNA005744HT BCNA Bos taurus cDNA, mRNA sequence (gb\|DY045426.1\|), blast E-value=0, identity=97.11%
	230-402, LB02756.CR_L09 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|EE349812.1\|), blast E-value=0, identity=97.11%
	230-402, LB02940.CR_M21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE351958.1\|), blast E-value=0, identity=97.11%
	230-402, LB02970.CR_K04 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE360207.1\|), blast E-value=0, identity=97.11%

	1-600, gnl\|bosTau2\|chr12 (45269700-45269103)
	1-600, gnl\|Hg17\|chr13 (106009692-106009093)
	1-600, gnl\|Mm7\|chr8 (8653545-8652937)