Ss1.1-Pla1-C0000937_F13.5
|
ATGTAAGCTCATCTGTAATCAAGGAAAGCAGACGACTGGGTTGCCCGGAGACGAAAGAAG
TACCGCAAAAAGGCATGAGGAAGCTTTAGGGGAAAGGGGTGCGTTCATTACCTTGATGTT
ACCGATAGTTTTGTGGATGTGTCCATATGCCAGAACTTAGCAGATTATATACTGTGTCTA
AGGGTAGTTCGTTATGTCAGGTAGCTGTCAGTGAAGGTGAAAAAAATAGAGAGCCCCTTG
ATATATGCCTCATCTTTTTACCTGAATGCTAAAGGAGAGAGGCCCCTCAAAATGCAGCCG
GCGACAGAGTAAGGGGAGCACACAAGTCAGCCAGCGGGGTGTTGGTCCACAGCCCTTCCG
CCGCCGCTGCAGAACGGCCCCAACCCTCCCAGCAAGCAGCCCGCCTCGCCCCCTCCGCCC
CAGCAGTTTGTGGTCCCGCACTCTCTGTTCGGGAGCCCGGTCCCCAAGGCGAAGGACCCG
CCCCGCTACGAGGAAGCCATCAAGCAGACGCGCAGCGCCCAGTCGTCCCTCCCCGAGGTT
GCCAGCGCTCACAGCCAGCAGATGGACGACCTCTTTGACATCCTCATTAAAAGTGGAGAG
ATTTCCCTCCCTATAAAAGAAGAACCTTCTCCTATTTCCAAAATGCGACCAGTGACAGCC
AGCATCACCACCATGCCCGTCAGCACAGTGGTGTCCCGGCCGCCCCCCTCGAGCCGCGGC
CGCCACCGCGGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGTAAGCTCATCTGTAATCAAGGAAAGCAGACGACTGGGTTGCCCGGAGACGAAAGAAG
TACCGCAAAAAGGCATGAGGAAGCTTTAGGGGAAAGGGGTGCGTTCATTACCTTGATGTT
ACCGATAGTTTTGTGGATGTGTCCATATGCCAGAACTTAGCAGATTATATACTGTGTCTA
AGGGTAGTTCGTTATGTCAGGTAGCTGTCAGTGAAGGTGAAAAAAATAGAGAGCCCCTTG
ATATATGCCTCATCTTTTTACCTGAATGCTAAAGGAGAGAGGCCCCTCAAAATGCAGCCG
GCGACAGAGTAAGGGGAGCACACAAGTCAGCCAGCGGGGTGTTGGTCCACAGCCCTTCCG
CCGCCGCTGCAGAACGGCCCCAACCCTCCCAGCAAGCAGCCCGCCTCGCCCCCTCCGCCC
CAGCAGTTTGTGGTCCCGCACTCTCTGTTCGGGAGCCCGGTCCCCAAGGCGAAGGACCCG
CCCCGCTACGAGGAAGCCATCAAGCAGACGCGCAGCGCCCAGTCGTCCCTCCCCGAGGTT
GCCAGCGCTCACAGCCAGCAGATGGACGACCTCTTTGACATCCTCATTAAAAGTGGAGAG
ATTTCCCTCCCTATAAAAGAAGAACCTTCTCCTATTTCCAAAATGCGACCAGTGACAGCC
AGCATCACCACCATGCCCGTCAGCACAGTGGTGTCCCGGCCGCCCCCCTCGAGCCGCGGC
CGCCACCGCGGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
642-698, - strand, RNAmicro p=0.933084 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
642-698, - strand, RNAmicro p=0.933084 |
|
597-701, UI-HF-CB0-atp-h-02-0-UI.r1 NIH_MGC_210 Homo sapiens cDNA clone
(gb|CF122063.1|), blast E-value=4e-32, identity=92.38% |
|
597-701, 4056675 BARC 8BOV Bos taurus cDNA clone 8BOV_17K05 5', mRNA
(gb|CK832616.1|), blast E-value=2e-39, identity=95.24% |
|
597-682, UI-M-HO0-cpv-k-20-0-UI.r1 NIH_BMAP_HO0 Mus musculus cDNA clone
(gb|CN533497.1|), blast E-value=2e-18, identity=89.53% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
597-701, UI-HF-CB0-atp-h-02-0-UI.r1 NIH_MGC_210 Homo sapiens cDNA clone
(gb|CF122063.1|), blast E-value=4e-32, identity=92.38% |
|
597-701, 4056675 BARC 8BOV Bos taurus cDNA clone 8BOV_17K05 5', mRNA
(gb|CK832616.1|), blast E-value=2e-39, identity=95.24% |
|
597-682, UI-M-HO0-cpv-k-20-0-UI.r1 NIH_BMAP_HO0 Mus musculus cDNA clone
(gb|CN533497.1|), blast E-value=2e-18, identity=89.53% |
|
4-223, gnl|bosTau2|chr25 (14973348-14973127) |
|
4-223, gnl|canFam2|chr6 (31951113-31950810) |
|
4-223, gnl|hg17|chr16 (14258757-14259057) |
|
4-223, gnl|Hg17|chr16 (14258894-14259126) |
|
4-223, gnl|loxAfr1|scaffold_5884 (37001-36700) |
|
4-223, gnl|mm7|chr16 (12955458-12955714) |
|
4-223, gnl|oryCun1|scaffold_212762 (126844-127139) |
|
4-223, gnl|panTro1|chr18_random (2155417-2155709) |
|
4-223, gnl|rheMac2|chr20 (14368439-14368731) |
| |
|
396-539, gnl|bosTau2|chr25 (14978132-14977989) |
|
396-539, gnl|Hg17|chr16 (14253719-14253862) |
|
396-539, gnl|Mm7|chr16 (12952583-12952726) |
| |
|
597-708, gnl|bosTau2|chr25 (14971880-14971769) |
|
597-708, gnl|Hg17|chr16 (14262265-14262376) |
|
597-708, gnl|Mm7|chr16 (12958980-12959091) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-223, gnl|bosTau2|chr25 (14973348-14973127) |
|
4-223, gnl|canFam2|chr6 (31951113-31950810) |
|
4-223, gnl|hg17|chr16 (14258757-14259057) |
|
4-223, gnl|Hg17|chr16 (14258894-14259126) |
|
4-223, gnl|loxAfr1|scaffold_5884 (37001-36700) |
|
4-223, gnl|mm7|chr16 (12955458-12955714) |
|
4-223, gnl|oryCun1|scaffold_212762 (126844-127139) |
|
4-223, gnl|panTro1|chr18_random (2155417-2155709) |
|
4-223, gnl|rheMac2|chr20 (14368439-14368731) |
| |
|
396-539, gnl|bosTau2|chr25 (14978132-14977989) |
|
396-539, gnl|Hg17|chr16 (14253719-14253862) |
|
396-539, gnl|Mm7|chr16 (12952583-12952726) |
| |
|
597-708, gnl|bosTau2|chr25 (14971880-14971769) |
|
597-708, gnl|Hg17|chr16 (14262265-14262376) |
|
597-708, gnl|Mm7|chr16 (12958980-12959091) |
