Non-Coding RNA Search

Ss1.1-Pla1-C0000937_N20.5

Sequence:


               
               CCGAGTAAACTGAGAGTTGGGAACAGCCCTCTATTAAGTAGCCCGCGTCGCGGAGCCTCT
TCCCACTCGACGAAGGCGAGCCTTCCCAGACGCGTCCGCTCGCCGGCAGCTGCGGTCCGG
GCCGTCTCCGCCTGTCCTGCCGCGCCTGCCGCTCGGACTGGGATCCTCATTCGCCTCCTC
CTCCCCGGTGGCTCTGCCGCTGCCACCTCCCGGCAGCCGCCAGGTGCGCCTGGAGAGCAG
CACCAATTGCTGGGCGGGCGGAGGTCACACCGAGCGCCAACTTCTACGACGCCGGGAAAC
CGCTGTAGCCGCTGCTGCCTCGGTCACCACCGCCTCAGTTCCCTTCATGTGGTTGTGAGC
CCCGAGGCCGAGCATGCGGACCAGGCTTCCCCCAGCGCTCGCCGCCCTGGGCGCGGCCCT
GCTCCTGTCTTCCATTGAGGCAGAAGTTGACCCACCTTCAGACTTGAATTTTAAAATTAT
AGATGAAAATACTGTTCATATGTCATGGGCAAGACCGGCTGATCCAATTGTGGGTTACAG
AATAACAGTGGACCCTACAACGGATGGGCCTACTAAAGAATTTACCCTTGCAGCTAGTAC
CACTGAAACCTTATTATCAGAGCTTATACCTGAAGTTGAATATGTGGTGACAATCACTTC
ATATGATGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAGTAAACTGAGAGTTGGGAACAGCCCTCTATTAAGTAGCCCGCGTCGCGGAGCCTCT
TCCCACTCGACGAAGGCGAGCCTTCCCAGACGCGTCCGCTCGCCGGCAGCTGCGGTCCGG
GCCGTCTCCGCCTGTCCTGCCGCGCCTGCCGCTCGGACTGGGATCCTCATTCGCCTCCTC
CTCCCCGGTGGCTCTGCCGCTGCCACCTCCCGGCAGCCGCCAGGTGCGCCTGGAGAGCAG
CACCAATTGCTGGGCGGGCGGAGGTCACACCGAGCGCCAACTTCTACGACGCCGGGAAAC
CGCTGTAGCCGCTGCTGCCTCGGTCACCACCGCCTCAGTTCCCTTCATGTGGTTGTGAGC
CCCGAGGCCGAGCATGCGGACCAGGCTTCCCCCAGCGCTCGCCGCCCTGGGCGCGGCCCT
GCTCCTGTCTTCCATTGAGGCAGAAGTTGACCCACCTTCAGACTTGAATTTTAAAATTAT
AGATGAAAATACTGTTCATATGTCATGGGCAAGACCGGCTGATCCAATTGTGGGTTACAG
AATAACAGTGGACCCTACAACGGATGGGCCTACTAAAGAATTTACCCTTGCAGCTAGTAC
CACTGAAACCTTATTATCAGAGCTTATACCTGAAGTTGAATATGTGGTGACAATCACTTC
ATATGATGAAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55627990|ref|XP_518919.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55627990|ref|XP_518919.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               159-272, - strand, RNAz p=0.598891

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-272, - strand, RNAz p=0.598891

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-341, gnl|bosTau2|chr9 (7963823-7964167)
               

               
               1-341, gnl|canFam2|chr12 (39840194-39840509)
               

               
               1-341, gnl|dasNov1|scaffold_2147 (99618-99982)
               

               
               1-341, gnl|galGal2|chr3 (79134924-79134583)
               

               
               1-341, gnl|hg17|chr6 (75972119-75972482)
               

               
               1-341, gnl|Hg17|chr6 (75972551-75972210)
               

               
               1-341, gnl|loxAfr1|scaffold_108419 (4112-3744)
               

               
               1-341, gnl|mm7|chr9 (79794699-79795017)
               

               
               1-341, gnl|Mm7|chr9 (79795086-79794800)
               

               
               1-341, gnl|monDom2|scaffold_0 (158242157-158241735)
               

               
               1-341, gnl|oryCun1|scaffold_200106 (144434-144777)
               

               
               1-341, gnl|panTro1|chr5 (77326350-77326712)
               

               
               1-341, gnl|rheMac2|chr4 (71347081-71347443)
               

               
               1-341, gnl|rn3|chr8 (84779237-84779552)
               


               
               445-563, gnl|bosTau2|chr9 (7974242-7974360)
               

               
               445-563, gnl|Hg17|chr6 (75961385-75961267)
               

               
               445-563, gnl|Mm7|chr9 (79784318-79784200)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-341, gnl|bosTau2|chr9 (7963823-7964167)
               

               
               1-341, gnl|canFam2|chr12 (39840194-39840509)
               

               
               1-341, gnl|dasNov1|scaffold_2147 (99618-99982)
               

               
               1-341, gnl|galGal2|chr3 (79134924-79134583)
               

               
               1-341, gnl|hg17|chr6 (75972119-75972482)
               

               
               1-341, gnl|Hg17|chr6 (75972551-75972210)
               

               
               1-341, gnl|loxAfr1|scaffold_108419 (4112-3744)
               

               
               1-341, gnl|mm7|chr9 (79794699-79795017)
               

               
               1-341, gnl|Mm7|chr9 (79795086-79794800)
               

               
               1-341, gnl|monDom2|scaffold_0 (158242157-158241735)
               

               
               1-341, gnl|oryCun1|scaffold_200106 (144434-144777)
               

               
               1-341, gnl|panTro1|chr5 (77326350-77326712)
               

               
               1-341, gnl|rheMac2|chr4 (71347081-71347443)
               

               
               1-341, gnl|rn3|chr8 (84779237-84779552)
               


               
               445-563, gnl|bosTau2|chr9 (7974242-7974360)
               

               
               445-563, gnl|Hg17|chr6 (75961385-75961267)
               

               
               445-563, gnl|Mm7|chr9 (79784318-79784200)

	1-341, gnl\|bosTau2\|chr9 (7963823-7964167)
	1-341, gnl\|canFam2\|chr12 (39840194-39840509)
	1-341, gnl\|dasNov1\|scaffold_2147 (99618-99982)
	1-341, gnl\|galGal2\|chr3 (79134924-79134583)
	1-341, gnl\|hg17\|chr6 (75972119-75972482)
	1-341, gnl\|Hg17\|chr6 (75972551-75972210)
	1-341, gnl\|loxAfr1\|scaffold_108419 (4112-3744)
	1-341, gnl\|mm7\|chr9 (79794699-79795017)
	1-341, gnl\|Mm7\|chr9 (79795086-79794800)
	1-341, gnl\|monDom2\|scaffold_0 (158242157-158241735)
	1-341, gnl\|oryCun1\|scaffold_200106 (144434-144777)
	1-341, gnl\|panTro1\|chr5 (77326350-77326712)
	1-341, gnl\|rheMac2\|chr4 (71347081-71347443)
	1-341, gnl\|rn3\|chr8 (84779237-84779552)

	445-563, gnl\|bosTau2\|chr9 (7974242-7974360)
	445-563, gnl\|Hg17\|chr6 (75961385-75961267)
	445-563, gnl\|Mm7\|chr9 (79784318-79784200)