Non-Coding RNA Search

Ss1.1-Pla1-C0001062_N11.5

Sequence:


               
               CCTTTTTTGTGTTTGTTTTTTTGTTTTTGTTTTTTGATGAAAGACTGGAAATTCATTAAT
GAGGAGGGAAGGAAGGGCTTCAAGGGGCTGTAATGAAAACAAATGATCCTCTTTAAATCT
CATGTCGGCCCAAGCCGGGGTGGGGGTTGCTTTCTCTTCTGGGGCTGGAGAATAGGAAAT
TCCACAGACAACAGACCACTTGAGGAGAGCCCAAGAATGCATTGCCTGCGAATTTCTTCT
CTGTGGCAAAGACCAGTCATGGCCAGTATGTCTGTGTTAATGAAACTTAGAATAAGCTTT
ATCTTAAGAACCGTAAAGTGTGGTCTACCAGATGTCCTTCCATTCCATCACAGGTTATCA
GTGTTTCTTGACCTTGTAAGGCTAGGAAGAGCCTTCTGGAGTCTTTTGGCCAATTGCCTC
TGCTTTTGAAGTAATACACATTTTTCTTTGGGGTTATGCTTTATGCCTTTCCCAAAGGAA
GTAGCTGCTTTTATTTTAATCTCTGTCATACAAAGAAGCATACAAAGGAGATGATTTAAC
TTCCACTTCTGTAGAGTCCATACTAAAGCAGACAGAATGCTAAGAGCATAGAATCAGGCA
CTCCCTGCCAGGTATTTGGGTTTCCTTTCTCCTTATTTTAGCTACTCTGTCCTCAGAATC
AAACTTCTCCCCTTCCACTGTATTGTACTCGTTTGGTGTTAAGCCAGGGCTCACACACTC
TGAAATCTCCAGTGATCTGTGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTTTTGTGTTTGTTTTTTTGTTTTTGTTTTTTGATGAAAGACTGGAAATTCATTAAT
GAGGAGGGAAGGAAGGGCTTCAAGGGGCTGTAATGAAAACAAATGATCCTCTTTAAATCT
CATGTCGGCCCAAGCCGGGGTGGGGGTTGCTTTCTCTTCTGGGGCTGGAGAATAGGAAAT
TCCACAGACAACAGACCACTTGAGGAGAGCCCAAGAATGCATTGCCTGCGAATTTCTTCT
CTGTGGCAAAGACCAGTCATGGCCAGTATGTCTGTGTTAATGAAACTTAGAATAAGCTTT
ATCTTAAGAACCGTAAAGTGTGGTCTACCAGATGTCCTTCCATTCCATCACAGGTTATCA
GTGTTTCTTGACCTTGTAAGGCTAGGAAGAGCCTTCTGGAGTCTTTTGGCCAATTGCCTC
TGCTTTTGAAGTAATACACATTTTTCTTTGGGGTTATGCTTTATGCCTTTCCCAAAGGAA
GTAGCTGCTTTTATTTTAATCTCTGTCATACAAAGAAGCATACAAAGGAGATGATTTAAC
TTCCACTTCTGTAGAGTCCATACTAAAGCAGACAGAATGCTAAGAGCATAGAATCAGGCA
CTCCCTGCCAGGTATTTGGGTTTCCTTTCTCCTTATTTTAGCTACTCTGTCCTCAGAATC
AAACTTCTCCCCTTCCACTGTATTGTACTCGTTTGGTGTTAAGCCAGGGCTCACACACTC
TGAAATCTCCAGTGATCTGTGGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               381-579, - strand, RNAz p=0.940302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               381-579, - strand, RNAz p=0.940302

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               445-518, + strand, RNAmicro p=0.990762

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               445-518, + strand, RNAmicro p=0.990762

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-744, gnl|bosTau2|chr18 (31605217-31604463)
               

               
               1-744, gnl|Hg17|chr16 (71825805-71826902)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr18 (31605217-31604463)
               

               
               1-744, gnl|Hg17|chr16 (71825805-71826902)

	1-744, gnl\|bosTau2\|chr18 (31605217-31604463)
	1-744, gnl\|Hg17\|chr16 (71825805-71826902)