Non-Coding RNA Search

Ss1.1-Pla1-C0001063_L08.5

Sequence:


               
               GGGGTACCCGGCTGGCTCTGCTGGCGGCCTCAGCCCGGATCTCGGTGCCGCAGCCCTGCG
CTTCTCCCTCTCTTGTCTACGGCTCCGCGGCCCCAGGCACAGCAAAGGCGGCGGAGCTGT
GGGCCACTGTATCTGGAGTAGAGCAGAGAAATTATTATGCCTATGTTCCCCTGGGACTCA
CTGGAAATTGTACAGTGACATCTGGGATTTAGTCTGAATGAAGTATCAGAAAAACACTTC
CCACCTGTAGCTGCCTGTCAGGTTAGGAGCGTGCAGCCTGGTGCCTAAGATGGAAGTAGA
TGTTAATGGAGAGTCCAGAAGCACCCTGACCAGCCTGCCCTTGCCCGTGGCCGAGGCAAG
CTCCCCGGGAAAGGCAGAGGCGGAAAAGCCCCGCTGCTCCAGCACGCCGTGCTCGCCCAT
GCGCCGGACTGTGTCAGGCTACCAGATCCTCCACATGGACTCTAACTATTTGGTGGGCTT
CACAACCGGTGAGGAACTCTTGAAGTTAGCCCAGAAGTGCACAGGCGGTGAAGAGAGTAA
GGGAGAAGCTGTGCCTTCTTTGCGCTCCAAACAGCTGGATGCAGGACTTGCACGTTCCTC
TCGTTTGTATAAAACCAGAAGTAGGTACTACCAGCCATACGAGATTCCAGCTGTCAATGG
CAGGAGGCGAAGGCGGATGCCTAGCTCAGGAGACAAGTGCACTAAATCCTTACCTTATGA
ACCTTATAAGGCCCTCCATGGGCCTCTGCCTCTTTGTCTTCTTAAAGGTAAGAGGGCTCA
CTCCAAATCTCTGGACTACCTCAATCTAGATAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGTACCCGGCTGGCTCTGCTGGCGGCCTCAGCCCGGATCTCGGTGCCGCAGCCCTGCG
CTTCTCCCTCTCTTGTCTACGGCTCCGCGGCCCCAGGCACAGCAAAGGCGGCGGAGCTGT
GGGCCACTGTATCTGGAGTAGAGCAGAGAAATTATTATGCCTATGTTCCCCTGGGACTCA
CTGGAAATTGTACAGTGACATCTGGGATTTAGTCTGAATGAAGTATCAGAAAAACACTTC
CCACCTGTAGCTGCCTGTCAGGTTAGGAGCGTGCAGCCTGGTGCCTAAGATGGAAGTAGA
TGTTAATGGAGAGTCCAGAAGCACCCTGACCAGCCTGCCCTTGCCCGTGGCCGAGGCAAG
CTCCCCGGGAAAGGCAGAGGCGGAAAAGCCCCGCTGCTCCAGCACGCCGTGCTCGCCCAT
GCGCCGGACTGTGTCAGGCTACCAGATCCTCCACATGGACTCTAACTATTTGGTGGGCTT
CACAACCGGTGAGGAACTCTTGAAGTTAGCCCAGAAGTGCACAGGCGGTGAAGAGAGTAA
GGGAGAAGCTGTGCCTTCTTTGCGCTCCAAACAGCTGGATGCAGGACTTGCACGTTCCTC
TCGTTTGTATAAAACCAGAAGTAGGTACTACCAGCCATACGAGATTCCAGCTGTCAATGG
CAGGAGGCGAAGGCGGATGCCTAGCTCAGGAGACAAGTGCACTAAATCCTTACCTTATGA
ACCTTATAAGGCCCTCCATGGGCCTCTGCCTCTTTGTCTTCTTAAAGGTAAGAGGGCTCA
CTCCAAATCTCTGGACTACCTCAATCTAGATAAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61842327|ref|XP_582659.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61842327|ref|XP_582659.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               464-583, - strand, RNAz p=0.773388
               

               
               664-816, - strand, RNAz p=0.948316

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               464-583, - strand, RNAz p=0.773388
               

               
               664-816, - strand, RNAz p=0.948316

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               265-816, gnl|bosTau2|chr7 (65101912-65102463)
               

               
               265-816, gnl|Hg17|chr5 (102639495-102640046)
               

               
               265-816, gnl|Mm7|chr1 (97498559-97498008)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               265-816, gnl|bosTau2|chr7 (65101912-65102463)
               

               
               265-816, gnl|Hg17|chr5 (102639495-102640046)
               

               
               265-816, gnl|Mm7|chr1 (97498559-97498008)

	464-583, - strand, RNAz p=0.773388
	664-816, - strand, RNAz p=0.948316

	265-816, gnl\|bosTau2\|chr7 (65101912-65102463)
	265-816, gnl\|Hg17\|chr5 (102639495-102640046)
	265-816, gnl\|Mm7\|chr1 (97498559-97498008)