Non-Coding RNA Search

Ss1.1-Spl1-SPL010001B09.5

Sequence:


               
               CTGTAAATGAGAGTCAACCACTGTGCTGTTTAGAGCTCTCCAGAGGGTTGAAGTGATTTC
ACGTAGAGTGCCGAGCCGGCCCGGCCTGTCATCACGGCTGACACTCCCAGGAGCCTTTGT
CCTCTCTCTCAAGGGACAACAGGCCTGGTAGAACCACTGTCCTTTGCCTTCCAGGTGCAG
TTCGGCCACGCTGGAGCTTGTGCCAACCAGGCTTCTGAAACCGCAATAGCCAAGAACCAG
GCTTTGAAGGAGGCGGGCGTGTTTGTGCCCCGGAGCTTCGATGAGCTTGGAGAGATCATC
CAGTGAGTGAACTCTGCGGAGGGTGCCACCTCCTTGTCCCTTTCCAGGTCCCTCCTGAGG
ACAGCAGCCTCTTCAGAATACAGGTCCGATGTCCCTGGGCCATCTCAGGTGTCTGAGGCA
GCTCTGTGGATCGTCCAGAATTCTTTCTTTTTGGCTTTGTTTTATTTGTCTCCAGAAACA
GCAGTTACAGGCGTTCAGACTGGTGTTAAAATGGTCAGTTTCTGAGCCTACCTACTGGCC
ATGTATGAGAGATGAGCACGGAAATATTTAGAAACTGTCACCTCTAATCAGTTGACAAAG
AGCTGTTGGACAAGCTGTGGTCCCTTCCCACTCCTCCCCTCTGTCCTTCCTTGGCCTCCA
GATTCGAAAGACCCACTCAGAAGGGAGGCACAGTTCTTGGCTAGAACCTATTTTCATTTA
GTTCTCAAGAATCTGGAGCGCCCACTGTGGCACAGCAGGATCGGCAGTGTCTCTGCAGTG
CCAGGAGGCAAGGTTCAGTACCTGGCCCAGCACAGTGGATTAAAGGATCAAGCATTGCTG
CAGGTGTGGCATAGGTCTCAACAGCAGCTCGGATGCAGTCCCTGGCCCAGGAACTCCATT
TGCCACTGGGCAGCCAAAAAAGGTGGAGAGGGCGAGGGTGACAAGTTGCGGCTCAGCGGT
TACAAACCTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTAAATGAGAGTCAACCACTGTGCTGTTTAGAGCTCTCCAGAGGGTTGAAGTGATTTC
ACGTAGAGTGCCGAGCCGGCCCGGCCTGTCATCACGGCTGACACTCCCAGGAGCCTTTGT
CCTCTCTCTCAAGGGACAACAGGCCTGGTAGAACCACTGTCCTTTGCCTTCCAGGTGCAG
TTCGGCCACGCTGGAGCTTGTGCCAACCAGGCTTCTGAAACCGCAATAGCCAAGAACCAG
GCTTTGAAGGAGGCGGGCGTGTTTGTGCCCCGGAGCTTCGATGAGCTTGGAGAGATCATC
CAGTGAGTGAACTCTGCGGAGGGTGCCACCTCCTTGTCCCTTTCCAGGTCCCTCCTGAGG
ACAGCAGCCTCTTCAGAATACAGGTCCGATGTCCCTGGGCCATCTCAGGTGTCTGAGGCA
GCTCTGTGGATCGTCCAGAATTCTTTCTTTTTGGCTTTGTTTTATTTGTCTCCAGAAACA
GCAGTTACAGGCGTTCAGACTGGTGTTAAAATGGTCAGTTTCTGAGCCTACCTACTGGCC
ATGTATGAGAGATGAGCACGGAAATATTTAGAAACTGTCACCTCTAATCAGTTGACAAAG
AGCTGTTGGACAAGCTGTGGTCCCTTCCCACTCCTCCCCTCTGTCCTTCCTTGGCCTCCA
GATTCGAAAGACCCACTCAGAAGGGAGGCACAGTTCTTGGCTAGAACCTATTTTCATTTA
GTTCTCAAGAATCTGGAGCGCCCACTGTGGCACAGCAGGATCGGCAGTGTCTCTGCAGTG
CCAGGAGGCAAGGTTCAGTACCTGGCCCAGCACAGTGGATTAAAGGATCAAGCATTGCTG
CAGGTGTGGCATAGGTCTCAACAGCAGCTCGGATGCAGTCCCTGGCCCAGGAACTCCATT
TGCCACTGGGCAGCCAAAAAAGGTGGAGAGGGCGAGGGTGACAAGTTGCGGCTCAGCGGT
TACAAACCTAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-195, + strand, RNAz p=0.643153

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-195, + strand, RNAz p=0.643153

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               78-536, gnl|bosTau2|chr23 (99487-99950)
               

               
               78-536, gnl|Hg17|chr17 (37288751-37288339)
               

               
               78-536, gnl|Mm7|chr11 (100593862-100593398)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-536, gnl|bosTau2|chr23 (99487-99950)
               

               
               78-536, gnl|Hg17|chr17 (37288751-37288339)
               

               
               78-536, gnl|Mm7|chr11 (100593862-100593398)

	78-536, gnl\|bosTau2\|chr23 (99487-99950)
	78-536, gnl\|Hg17\|chr17 (37288751-37288339)
	78-536, gnl\|Mm7\|chr11 (100593862-100593398)