Non-Coding RNA Search

Ss1.1-Spl1-SPL010001E07.5

Sequence:


               
               TGGCAGGCAGAAATGGGGCCAGGAAGGCAGGGGCCTGGGATGGAAACGCTCTGGGGTGTC
TGGGGTGCCACGCAAAGCTCCCTGGTTCTGGAGAAGTTGGCGGGGGGGGGGGGGTCCTAG
GGAGTCTGGAAGGCCAGCACTGAAAGTCTGGATTTGATCCCGGGGCAGTAATTTCCAAGC
TTTTAAAAATGGTAGAACTCTTTCTTCTAGAGGATTCTTCACCCAGGGCTATAAAATAGA
TCAGCTTGGAACCTGGCTGATGAGGCGAAAGTGGGGGCATGTCCACCCCCTCGACTGCCT
CTCCCCCAGGCACTTCCATGAGCCCCCTGGCTCAGGCCGAGGATCCCTTTCTGGGGCAGA
GAGGCTCCGATGGAGGGTTTAGAGCTGGACCAGCCTGGCCCTTCGGTTTCTCTGCAGGTT
CAGAGGTTCAGCCCTTCCCCCAACCCCCGTAAGAAGTTCAGCCCAGCCAGGCTCGCTGGG
CAGGGCCAAACCCTGTTGGGGACCAGGGCTCCAAAAGGAGCCAGGCTGATGGGGGACCCC
TCTTCTGGGCTCCTAGGAGCAAGTGATGCCCCCTCCAGGGCCTCTAGAGCCAGCTGGGCC
CCCCTTGAGCTGTTGGGATGACCCCTCGGAACAGTGGGCCCTGCCTGCCAGCGGCTGCTG
TCTGGGAGGTTGTAGGCCCTTTGTGGGAGGTAGGAGCTGGCAGCCAGCCACACTCCTGGA
GCAGGCACACTGACCTGGCACCATCACTGGCTGGGACAGGTGGAGGCAAAGTCTCCAGAG
GCCCAGGAGTCCCACTGGTTCCCTTAGGGTGAGGTCATTTAGGTCAGAATCGGGACGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCAGGCAGAAATGGGGCCAGGAAGGCAGGGGCCTGGGATGGAAACGCTCTGGGGTGTC
TGGGGTGCCACGCAAAGCTCCCTGGTTCTGGAGAAGTTGGCGGGGGGGGGGGGGTCCTAG
GGAGTCTGGAAGGCCAGCACTGAAAGTCTGGATTTGATCCCGGGGCAGTAATTTCCAAGC
TTTTAAAAATGGTAGAACTCTTTCTTCTAGAGGATTCTTCACCCAGGGCTATAAAATAGA
TCAGCTTGGAACCTGGCTGATGAGGCGAAAGTGGGGGCATGTCCACCCCCTCGACTGCCT
CTCCCCCAGGCACTTCCATGAGCCCCCTGGCTCAGGCCGAGGATCCCTTTCTGGGGCAGA
GAGGCTCCGATGGAGGGTTTAGAGCTGGACCAGCCTGGCCCTTCGGTTTCTCTGCAGGTT
CAGAGGTTCAGCCCTTCCCCCAACCCCCGTAAGAAGTTCAGCCCAGCCAGGCTCGCTGGG
CAGGGCCAAACCCTGTTGGGGACCAGGGCTCCAAAAGGAGCCAGGCTGATGGGGGACCCC
TCTTCTGGGCTCCTAGGAGCAAGTGATGCCCCCTCCAGGGCCTCTAGAGCCAGCTGGGCC
CCCCTTGAGCTGTTGGGATGACCCCTCGGAACAGTGGGCCCTGCCTGCCAGCGGCTGCTG
TCTGGGAGGTTGTAGGCCCTTTGTGGGAGGTAGGAGCTGGCAGCCAGCCACACTCCTGGA
GCAGGCACACTGACCTGGCACCATCACTGGCTGGGACAGGTGGAGGCAAAGTCTCCAGAG
GCCCAGGAGTCCCACTGGTTCCCTTAGGGTGAGGTCATTTAGGTCAGAATCGGGACGACT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               4-108, - strand, RNAz p=0.765144
               

               
               406-582, - strand, RNAz p=0.9996
               

               
               623-715, + strand, RNAz p=0.863232

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-108, - strand, RNAz p=0.765144
               

               
               406-582, - strand, RNAz p=0.9996
               

               
               623-715, + strand, RNAz p=0.863232

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-715, gnl|bosTau2|chr15 (41679123-41679849)
               

               
               4-715, gnl|Hg17|chr11 (72714968-72715989)
               

               
               4-715, gnl|Mm7|chr7 (96961867-96961252)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-715, gnl|bosTau2|chr15 (41679123-41679849)
               

               
               4-715, gnl|Hg17|chr11 (72714968-72715989)
               

               
               4-715, gnl|Mm7|chr7 (96961867-96961252)

	4-108, - strand, RNAz p=0.765144
	406-582, - strand, RNAz p=0.9996
	623-715, + strand, RNAz p=0.863232

	4-715, gnl\|bosTau2\|chr15 (41679123-41679849)
	4-715, gnl\|Hg17\|chr11 (72714968-72715989)
	4-715, gnl\|Mm7\|chr7 (96961867-96961252)