Non-Coding RNA Search

Ss1.1-Spl1-SPL010001F01.5

Sequence:


               
               TGCTGGTAGGAGCTTACGGGGCCGACAAGGTTGTCGTGTACCGAGCTCAGCCGGTGGTGA
CCGCCACTGTCCAGCTGATGGTGCAAGAATCCCTGAATCCTGCTGTGAAGAATTGTGTCC
AGCCCCAAACCAAGACACCAGTGAGCTGCTTTACCATCCAGATGTGCGTGGGAGCCACTG
GGCACAACATTCCTGAGAAGCTGCGCCTAAATGCCGAGCTGCAGCTGGACCGGCAGAAGC
CCCACCAGAGCCGGCGGGTGCTGCTGCTGGCTTCCCAACAGGCGAGCACTGTCCTGGACG
TGGATCTGACCTGGAGGCAGAGCCCCACCTGCCACAACACCACGGCCTTCCTCCGGGATG
AGGCTGATTTCCGGGACAAGCTGAGCCCCATCGTGCTCAGCTTCAATGTGTCCCTGCAGC
CGGAGAAGAATGGAGACGCCCTCACGTTCATGCTGCATGGAGACACCCACGTTCAGGAAC
AGACCCGCATCATCCTGGACTGTGGGGAAGACCAAGTGTGCGTGCCAAAGCTCCAGCTCT
CGGCCAACACGACAGGCTCCCCACTCCTAGTTGGAGCTGATAATGTGCTGGAGCTGCACG
TGGTCGCGGCCAATGAGGGCGAGGGAGCCCATGAGGCCGAGCTGGTTGTGCACCTGCCCC
CAGGTGCTCACTACATGCAGGCCCTCAGCAACACCAAGAGCTTCGAGAGGCTCATCTGTA
CCCAGAAGAAGGAGAATGAGACCAAAGTGGTGCTGTGTGAGCTGGGCAACCCCATGAAGG
GGGATACCCAGATAGAAATCACGATGTTGGTGAGTGTGAGGAACCTGGAAGAGGCTGGGG
AGCACGTGTCCTTCCGGCTGCAGATCAGGAGCAAGAACAGCCAGAATCCAAACAGCGAGA
CAGTGGTGCTGGATGTGCAAGTCCGGGCAGAGGCCCACCTGGAGCTGAGAGGGAACTCCT
TTCCAGCCTCCCTGGTGATGGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGGTAGGAGCTTACGGGGCCGACAAGGTTGTCGTGTACCGAGCTCAGCCGGTGGTGA
CCGCCACTGTCCAGCTGATGGTGCAAGAATCCCTGAATCCTGCTGTGAAGAATTGTGTCC
AGCCCCAAACCAAGACACCAGTGAGCTGCTTTACCATCCAGATGTGCGTGGGAGCCACTG
GGCACAACATTCCTGAGAAGCTGCGCCTAAATGCCGAGCTGCAGCTGGACCGGCAGAAGC
CCCACCAGAGCCGGCGGGTGCTGCTGCTGGCTTCCCAACAGGCGAGCACTGTCCTGGACG
TGGATCTGACCTGGAGGCAGAGCCCCACCTGCCACAACACCACGGCCTTCCTCCGGGATG
AGGCTGATTTCCGGGACAAGCTGAGCCCCATCGTGCTCAGCTTCAATGTGTCCCTGCAGC
CGGAGAAGAATGGAGACGCCCTCACGTTCATGCTGCATGGAGACACCCACGTTCAGGAAC
AGACCCGCATCATCCTGGACTGTGGGGAAGACCAAGTGTGCGTGCCAAAGCTCCAGCTCT
CGGCCAACACGACAGGCTCCCCACTCCTAGTTGGAGCTGATAATGTGCTGGAGCTGCACG
TGGTCGCGGCCAATGAGGGCGAGGGAGCCCATGAGGCCGAGCTGGTTGTGCACCTGCCCC
CAGGTGCTCACTACATGCAGGCCCTCAGCAACACCAAGAGCTTCGAGAGGCTCATCTGTA
CCCAGAAGAAGGAGAATGAGACCAAAGTGGTGCTGTGTGAGCTGGGCAACCCCATGAAGG
GGGATACCCAGATAGAAATCACGATGTTGGTGAGTGTGAGGAACCTGGAAGAGGCTGGGG
AGCACGTGTCCTTCCGGCTGCAGATCAGGAGCAAGAACAGCCAGAATCCAAACAGCGAGA
CAGTGGTGCTGGATGTGCAAGTCCGGGCAGAGGCCCACCTGGAGCTGAGAGGGAACTCCT
TTCCAGCCTCCCTGGTGATGGCGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|35520|emb|CAA29987.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|35520|emb|CAA29987.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               45-148, - strand, RNAz p=0.806912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-148, - strand, RNAz p=0.806912

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               45-148, gnl|bosTau2|chr19 (37887597-37887700)
               

               
               45-148, gnl|canFam2|chr9 (22375905-22375709)
               

               
               45-148, gnl|dasNov1|scaffold_50341 (6497-6286)
               

               
               45-148, gnl|echTel1|scaffold_305872 (1367-1157)
               

               
               45-148, gnl|fr1|chrUn (264261936-264261705)
               

               
               45-148, gnl|hg17|chr17 (39813276-39813480)
               

               
               45-148, gnl|Hg17|chr17 (39813383-39813280)
               

               
               45-148, gnl|mm7|chr11 (102570164-102570343)
               

               
               45-148, gnl|Mm7|chr11 (102570271-102570168)
               

               
               45-148, gnl|monDom2|scaffold_18 (42317776-42317610)
               

               
               45-148, gnl|oryCun1|scaffold_208977 (93111-93291)
               

               
               45-148, gnl|panTro1|chr19 (43028224-43028428)
               

               
               45-148, gnl|rheMac2|chr16 (54476937-54477140)
               

               
               45-148, gnl|rn3|chr10 (91579229-91579412)
               


               
               206-355, gnl|bosTau2|chr19 (37887939-37888088)
               

               
               206-355, gnl|Hg17|chr17 (39813046-39812897)
               

               
               206-355, gnl|Mm7|chr11 (102569938-102569789)
               


               
               547-693, gnl|bosTau2|chr19 (37889043-37889189)
               

               
               547-693, gnl|Hg17|chr17 (39811407-39811261)
               

               
               547-693, gnl|Mm7|chr11 (102569063-102568917)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-148, gnl|bosTau2|chr19 (37887597-37887700)
               

               
               45-148, gnl|canFam2|chr9 (22375905-22375709)
               

               
               45-148, gnl|dasNov1|scaffold_50341 (6497-6286)
               

               
               45-148, gnl|echTel1|scaffold_305872 (1367-1157)
               

               
               45-148, gnl|fr1|chrUn (264261936-264261705)
               

               
               45-148, gnl|hg17|chr17 (39813276-39813480)
               

               
               45-148, gnl|Hg17|chr17 (39813383-39813280)
               

               
               45-148, gnl|mm7|chr11 (102570164-102570343)
               

               
               45-148, gnl|Mm7|chr11 (102570271-102570168)
               

               
               45-148, gnl|monDom2|scaffold_18 (42317776-42317610)
               

               
               45-148, gnl|oryCun1|scaffold_208977 (93111-93291)
               

               
               45-148, gnl|panTro1|chr19 (43028224-43028428)
               

               
               45-148, gnl|rheMac2|chr16 (54476937-54477140)
               

               
               45-148, gnl|rn3|chr10 (91579229-91579412)
               


               
               206-355, gnl|bosTau2|chr19 (37887939-37888088)
               

               
               206-355, gnl|Hg17|chr17 (39813046-39812897)
               

               
               206-355, gnl|Mm7|chr11 (102569938-102569789)
               


               
               547-693, gnl|bosTau2|chr19 (37889043-37889189)
               

               
               547-693, gnl|Hg17|chr17 (39811407-39811261)
               

               
               547-693, gnl|Mm7|chr11 (102569063-102568917)

	45-148, gnl\|bosTau2\|chr19 (37887597-37887700)
	45-148, gnl\|canFam2\|chr9 (22375905-22375709)
	45-148, gnl\|dasNov1\|scaffold_50341 (6497-6286)
	45-148, gnl\|echTel1\|scaffold_305872 (1367-1157)
	45-148, gnl\|fr1\|chrUn (264261936-264261705)
	45-148, gnl\|hg17\|chr17 (39813276-39813480)
	45-148, gnl\|Hg17\|chr17 (39813383-39813280)
	45-148, gnl\|mm7\|chr11 (102570164-102570343)
	45-148, gnl\|Mm7\|chr11 (102570271-102570168)
	45-148, gnl\|monDom2\|scaffold_18 (42317776-42317610)
	45-148, gnl\|oryCun1\|scaffold_208977 (93111-93291)
	45-148, gnl\|panTro1\|chr19 (43028224-43028428)
	45-148, gnl\|rheMac2\|chr16 (54476937-54477140)
	45-148, gnl\|rn3\|chr10 (91579229-91579412)

	206-355, gnl\|bosTau2\|chr19 (37887939-37888088)
	206-355, gnl\|Hg17\|chr17 (39813046-39812897)
	206-355, gnl\|Mm7\|chr11 (102569938-102569789)

	547-693, gnl\|bosTau2\|chr19 (37889043-37889189)
	547-693, gnl\|Hg17\|chr17 (39811407-39811261)
	547-693, gnl\|Mm7\|chr11 (102569063-102568917)