Non-Coding RNA Search

Ss1.1-Spl1-SPL010001G01.5

Sequence:


               
               AATTTTACCTGCCGCCTGGCCACATCCCGAGCTGGAAGGCGGGTGCGCGGGCGCGCAGCG
GGCACCATGCAGGGAGGCTGCCAGGGACCGTGGGCAGCGCCGCTCTCTGCCGCCCACCTG
GCGCTGTGAGACGCGCGCTGCCACCATGTTCCCCAGCCCCGCGCTCACGCCCACGCCGTT
CTCGGTCAAAGACATCTTGAACCTGGAGCAACAGCAGCGCAGCCTGGCCGCCGGGGAGCT
CTCCGCGCGCTTGGAGGCCACCCTGGCGCCCGCCTCCTGCATGCTGGCCGCCTTCAAGCC
CGAGGCCTACGCGGGGCCGGAGGCCGCAGCGCCCGGCCTCTCCGAGCTGCGCGCCGAGCT
GGGCCCCGCGCCCTCACCAGCCAAGTGCGCGCCCTCCTTCTCAGCCGCCCCCGCCTTCTA
CCCGCGTGCCTATGGCGACCCCGACCCCGCCAAGGACCCTCGAGCCGATAAGAAAGAGCT
GTGCGCGCTGCAGAAGGCGGTGGAGCTGGAGAAGCCAGAGGCGGACAGCGCCGAGAGACC
TCGGGCGCGACGACGAAGGAAGCCGCGCGTGCTCTTTTCGCAGGCACAGGTCTACGAGCT
GGAGCGACGCTTCAAGCAGCAGCGGTACCTGTCGGCTCCCGAGCGTGACCAGTTGGCCAG
CGTGCTGAAGCTCACGTCCACGCAGGTCAAGATCTGGTTCCAGAACCGGCGCTACAAGTG
CAAGCGGCAACGGCAGGACCAGACTCTGGAGCTAGTGGGGCTGCCCCCGCCCCCGCCGCC
GCCGGCCCGCAGGATCGCGGTGCCAGTGCTGGTGCGCGATGGCAAGCCTTGCCTCGGGGA
CTCCGCGCCCTACGCGCCAGCCTACGGCGTGGGCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTACCTGCCGCCTGGCCACATCCCGAGCTGGAAGGCGGGTGCGCGGGCGCGCAGCG
GGCACCATGCAGGGAGGCTGCCAGGGACCGTGGGCAGCGCCGCTCTCTGCCGCCCACCTG
GCGCTGTGAGACGCGCGCTGCCACCATGTTCCCCAGCCCCGCGCTCACGCCCACGCCGTT
CTCGGTCAAAGACATCTTGAACCTGGAGCAACAGCAGCGCAGCCTGGCCGCCGGGGAGCT
CTCCGCGCGCTTGGAGGCCACCCTGGCGCCCGCCTCCTGCATGCTGGCCGCCTTCAAGCC
CGAGGCCTACGCGGGGCCGGAGGCCGCAGCGCCCGGCCTCTCCGAGCTGCGCGCCGAGCT
GGGCCCCGCGCCCTCACCAGCCAAGTGCGCGCCCTCCTTCTCAGCCGCCCCCGCCTTCTA
CCCGCGTGCCTATGGCGACCCCGACCCCGCCAAGGACCCTCGAGCCGATAAGAAAGAGCT
GTGCGCGCTGCAGAAGGCGGTGGAGCTGGAGAAGCCAGAGGCGGACAGCGCCGAGAGACC
TCGGGCGCGACGACGAAGGAAGCCGCGCGTGCTCTTTTCGCAGGCACAGGTCTACGAGCT
GGAGCGACGCTTCAAGCAGCAGCGGTACCTGTCGGCTCCCGAGCGTGACCAGTTGGCCAG
CGTGCTGAAGCTCACGTCCACGCAGGTCAAGATCTGGTTCCAGAACCGGCGCTACAAGTG
CAAGCGGCAACGGCAGGACCAGACTCTGGAGCTAGTGGGGCTGCCCCCGCCCCCGCCGCC
GCCGGCCCGCAGGATCGCGGTGCCAGTGCTGGTGCGCGATGGCAAGCCTTGCCTCGGGGA
CTCCGCGCCCTACGCGCCAGCCTACGGCGTGGGCCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61828317|ref|XP_583382.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828317|ref|XP_583382.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-202, + strand, RNAz p=0.556423

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-202, + strand, RNAz p=0.556423

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               6-476, gnl|bosTau2|chr3 (61159537-61160007)
               

               
               6-476, gnl|Hg17|chr5 (172594831-172594359)
               

               
               6-476, gnl|Mm7|chr17 (25026273-25025801)
               


               
               532-874, gnl|bosTau2|chr26 (11932659-11932998)
               

               
               532-874, gnl|Hg17|chr10 (101284793-101285132)
               

               
               532-874, gnl|Mm7|chr19 (43508240-43508579)
               


               
               546-837, gnl|bosTau2|chr21 (31472895-31472590)
               

               
               546-837, gnl|Hg17|chr14 (36120335-36120030)
               

               
               546-837, gnl|Mm7|chr12 (54542554-54542246)
               


               
               547-833, gnl|bosTau2|chr13 (25709752-25710049)
               

               
               547-833, gnl|Hg17|chr20 (21325064-21324752)
               

               
               547-833, gnl|Mm7|chr2 (146825242-146824936)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-476, gnl|bosTau2|chr3 (61159537-61160007)
               

               
               6-476, gnl|Hg17|chr5 (172594831-172594359)
               

               
               6-476, gnl|Mm7|chr17 (25026273-25025801)
               


               
               532-874, gnl|bosTau2|chr26 (11932659-11932998)
               

               
               532-874, gnl|Hg17|chr10 (101284793-101285132)
               

               
               532-874, gnl|Mm7|chr19 (43508240-43508579)
               


               
               546-837, gnl|bosTau2|chr21 (31472895-31472590)
               

               
               546-837, gnl|Hg17|chr14 (36120335-36120030)
               

               
               546-837, gnl|Mm7|chr12 (54542554-54542246)
               


               
               547-833, gnl|bosTau2|chr13 (25709752-25710049)
               

               
               547-833, gnl|Hg17|chr20 (21325064-21324752)
               

               
               547-833, gnl|Mm7|chr2 (146825242-146824936)

	6-476, gnl\|bosTau2\|chr3 (61159537-61160007)
	6-476, gnl\|Hg17\|chr5 (172594831-172594359)
	6-476, gnl\|Mm7\|chr17 (25026273-25025801)

	532-874, gnl\|bosTau2\|chr26 (11932659-11932998)
	532-874, gnl\|Hg17\|chr10 (101284793-101285132)
	532-874, gnl\|Mm7\|chr19 (43508240-43508579)

	546-837, gnl\|bosTau2\|chr21 (31472895-31472590)
	546-837, gnl\|Hg17\|chr14 (36120335-36120030)
	546-837, gnl\|Mm7\|chr12 (54542554-54542246)

	547-833, gnl\|bosTau2\|chr13 (25709752-25710049)
	547-833, gnl\|Hg17\|chr20 (21325064-21324752)
	547-833, gnl\|Mm7\|chr2 (146825242-146824936)