Non-Coding RNA Search

Ss1.1-Spl1-SPL010002B12.5

Sequence:


               
               GCTGCCCGGTCGCGGAGCGAGAGGCTGAGAGAGTCGGAGACGCTATCCGCTTCCATCCGT
CGCGCAGACCCTGCCGGAGCCGCTGCCGCAATGGATGATCGGGAGGATCTGGTGTACCAG
GCGAAGCTGGCCGAGCAGGCTGAGCGATATGACGAAATGGTGGAATCAATGAAGAAAGTA
GCAGGGATGGACGTGGAGTTGACAGTTGAAGAAAGAAACCTCCTATCTGTTGCATATAAA
AATGTGATTGGAGCTAGAAGAGCTTCCTGGAGAATAATCAGCAGCATTGAACAGAAAGAA
GAAAACAAGGGAGGAGAAGACAAACTAAAAATGATTCGGGAATATCGGCAAATGGTTGAG
ACTGAGCTAAAATTAATCTGTTGTGACATTCTGGATGTACTGGACAAACACCTCATTCCA
GCAGCTAACACTGGCGAGTCCAAGGTTTTCTATTATAAAATGAAAGGGGACTACCACAGG
TATCTGGCTGAATTTGCCACAGGAAACGACAGGAAAGAGGCTGCAGAGAACAGCCTAGTG
GCTTATAAAGCTGCTAGTGATATTGCAATGACAGAACTTCCACCAACACATCCTATTCGT
TTAGGTCTTGCCCTCAACTTTTCAGTATTCTACTATGAAATTCTTAATTCCCCTGACCGT
GCCTGCAGGTTGGCAAAAGCAGCTTTTGATGATGCAATTGCAGAACTGGATACGCTGAGT
GAAGAAAGCTATAAGGACTCTACACTTATCATGCAGTTGTTACGTGATAATCTGACACTA
TGGACTTCAGACATGCAGGGTGATGGTGAAGAGCAGAATAAAGAAGCGCTGCAGGATGTG
GAAGATGAAAATCAGTGAGACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCCCGGTCGCGGAGCGAGAGGCTGAGAGAGTCGGAGACGCTATCCGCTTCCATCCGT
CGCGCAGACCCTGCCGGAGCCGCTGCCGCAATGGATGATCGGGAGGATCTGGTGTACCAG
GCGAAGCTGGCCGAGCAGGCTGAGCGATATGACGAAATGGTGGAATCAATGAAGAAAGTA
GCAGGGATGGACGTGGAGTTGACAGTTGAAGAAAGAAACCTCCTATCTGTTGCATATAAA
AATGTGATTGGAGCTAGAAGAGCTTCCTGGAGAATAATCAGCAGCATTGAACAGAAAGAA
GAAAACAAGGGAGGAGAAGACAAACTAAAAATGATTCGGGAATATCGGCAAATGGTTGAG
ACTGAGCTAAAATTAATCTGTTGTGACATTCTGGATGTACTGGACAAACACCTCATTCCA
GCAGCTAACACTGGCGAGTCCAAGGTTTTCTATTATAAAATGAAAGGGGACTACCACAGG
TATCTGGCTGAATTTGCCACAGGAAACGACAGGAAAGAGGCTGCAGAGAACAGCCTAGTG
GCTTATAAAGCTGCTAGTGATATTGCAATGACAGAACTTCCACCAACACATCCTATTCGT
TTAGGTCTTGCCCTCAACTTTTCAGTATTCTACTATGAAATTCTTAATTCCCCTGACCGT
GCCTGCAGGTTGGCAAAAGCAGCTTTTGATGATGCAATTGCAGAACTGGATACGCTGAGT
GAAGAAAGCTATAAGGACTCTACACTTATCATGCAGTTGTTACGTGATAATCTGACACTA
TGGACTTCAGACATGCAGGGTGATGGTGAAGAGCAGAATAAAGAAGCGCTGCAGGATGTG
GAAGATGAAAATCAGTGAGACATA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|530049|gb|AAC37321.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|530049|gb|AAC37321.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               196-315, - strand, RNAz p=0.782946

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-315, - strand, RNAz p=0.782946

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-762, gnl|bosTau2|chr10 (26944020-26944776)
               

               
               1-762, gnl|Hg17|chr2 (138880181-138879424)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-762, gnl|bosTau2|chr10 (26944020-26944776)
               

               
               1-762, gnl|Hg17|chr2 (138880181-138879424)

	1-762, gnl\|bosTau2\|chr10 (26944020-26944776)
	1-762, gnl\|Hg17\|chr2 (138880181-138879424)