Non-Coding RNA Search

Ss1.1-Spl1-SPL010002E05.5

Sequence:


               
               CTTACAAAGAAAGAAATGCCTCACATCTTACACGGCTGACAAAACGCATGTGGGACAGCT
TCCATGTGGTACTCACATCGAGGCTGAATGAAAACTTGTCATTAGACCTTATTTTGCTTC
CAGGGCATTTATGAAAATAAAGACTGTACAGGCCTTCTTGGTCATCAGTGCTGATGTTAA
AGAAAAACTGAAAGGGAAGAAAAAAAAAAAATTAAGGTGCCAAATCCTCAGCTAAAATGT
TTAAATCCTAGAAATAAATCATGAACACGATGAACAGGAGAAAAGAGACCACTTATTTAA
ATTAATCGAACTCTCCCAGAGCAGAGTCTAAACAGACGTTTTCTAATGTCCCTCCGAATG
TCCTGGTACAAACAGTTCCATGCCAACAGGAAAGCTGACGCGACTGTACAGTGAGTACCT
ATGAACTCACGACACAGATTCCACCATGAGCAGCTGCCGACGTTTGCTTTATCACATCGC
TGTCCAGCAGAGACGGGGTTTTGCAGGAGTTTGCAGAGCTAGCCTAAGAAGCAGCTGTCT
AGTCTTCAAGACAGCATATATGGTTGTTTTGCTCTCTATGTAAAAACAAAAACTTCTGGG
AGCTCTCTTATGGCTCAGCTGGTTAAGGATCAGGCATTGTCACTGCAGCGCCTCGGGTCT
CCGCTGTGGCGCTGGTTTGATCTCTGGCCCAGGAACTTCCACATGCCGTGGGTGCAGCCA
AAAGAGAAAAGAAACAAACAAAAAACCTTCTGAAAAGAGAAGAAGAGAGTTCCCGCTGTG
GCTCAGTGGTAACAAACCTAAACAGTATCTTTGAGGATGTGGGTTCGTTCCCTGGCCCCA
TTCAGTGGGTTAAGGACCTGGTGTTGCTGTAGGTCACAGACATAGCCTGGATCTGGCACT
GCTGTGGCTGTGGTGCAGGCTGGCAGCTGCAGCTTGGATGCGACCCCTAGCCTGGGAACT
TCCATATGCTTCGGGTACAGCCCTAAAAAGACAAAAAAAAGAAAAAGAAAGGAGGGAAGG
AAGGAAGGAAGGAAGGAAGGAAGAAAAAGAAAGGGAGATTCATCTGATAAAGGTAGAGAA
CCATATTCTCTCATCAAAATGACCCGTCTGATTTCAGGCCATAGTAACAGAGGCTACATC
TTCTACACTGAGACATTTTTCTTTGGTTTTCAACATATTTCATGCATTCAGATGAAATGT
AACATAAATCAA------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
CCAGCAGCTGCAGTTCTGATTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTACAAAGAAAGAAATGCCTCACATCTTACACGGCTGACAAAACGCATGTGGGACAGCT
TCCATGTGGTACTCACATCGAGGCTGAATGAAAACTTGTCATTAGACCTTATTTTGCTTC
CAGGGCATTTATGAAAATAAAGACTGTACAGGCCTTCTTGGTCATCAGTGCTGATGTTAA
AGAAAAACTGAAAGGGAAGAAAAAAAAAAAATTAAGGTGCCAAATCCTCAGCTAAAATGT
TTAAATCCTAGAAATAAATCATGAACACGATGAACAGGAGAAAAGAGACCACTTATTTAA
ATTAATCGAACTCTCCCAGAGCAGAGTCTAAACAGACGTTTTCTAATGTCCCTCCGAATG
TCCTGGTACAAACAGTTCCATGCCAACAGGAAAGCTGACGCGACTGTACAGTGAGTACCT
ATGAACTCACGACACAGATTCCACCATGAGCAGCTGCCGACGTTTGCTTTATCACATCGC
TGTCCAGCAGAGACGGGGTTTTGCAGGAGTTTGCAGAGCTAGCCTAAGAAGCAGCTGTCT
AGTCTTCAAGACAGCATATATGGTTGTTTTGCTCTCTATGTAAAAACAAAAACTTCTGGG
AGCTCTCTTATGGCTCAGCTGGTTAAGGATCAGGCATTGTCACTGCAGCGCCTCGGGTCT
CCGCTGTGGCGCTGGTTTGATCTCTGGCCCAGGAACTTCCACATGCCGTGGGTGCAGCCA
AAAGAGAAAAGAAACAAACAAAAAACCTTCTGAAAAGAGAAGAAGAGAGTTCCCGCTGTG
GCTCAGTGGTAACAAACCTAAACAGTATCTTTGAGGATGTGGGTTCGTTCCCTGGCCCCA
TTCAGTGGGTTAAGGACCTGGTGTTGCTGTAGGTCACAGACATAGCCTGGATCTGGCACT
GCTGTGGCTGTGGTGCAGGCTGGCAGCTGCAGCTTGGATGCGACCCCTAGCCTGGGAACT
TCCATATGCTTCGGGTACAGCCCTAAAAAGACAAAAAAAAGAAAAAGAAAGGAGGGAAGG
AAGGAAGGAAGGAAGGAAGGAAGAAAAAGAAAGGGAGATTCATCTGATAAAGGTAGAGAA
CCATATTCTCTCATCAAAATGACCCGTCTGATTTCAGGCCATAGTAACAGAGGCTACATC
TTCTACACTGAGACATTTTTCTTTGGTTTTCAACATATTTCATGCATTCAGATGAAATGT
AACATAAATCAA------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
CCAGCAGCTGCAGTTCTGATTGGA

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-586, gnl|bosTau2|chr11 (80651903-80651324)
               

               
               1-586, gnl|Hg17|chr9 (129932887-129932242)
               


               
               1069-1212, gnl|bosTau2|chr11 (80651284-80651139)
               

               
               1069-1212, gnl|canFam2|chr9 (57116598-57116310)
               

               
               1069-1212, gnl|hg17|chr9 (129932032-129932223)
               

               
               1069-1212, gnl|Hg17|chr9 (129932206-129932069)
               

               
               1069-1212, gnl|loxAfr1|scaffold_26900 (11985-11804)
               

               
               1069-1212, gnl|oryCun1|scaffold_184048 (7668-7454)
               

               
               1069-1212, gnl|panTro1|chr11 (114801316-114801511)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-586, gnl|bosTau2|chr11 (80651903-80651324)
               

               
               1-586, gnl|Hg17|chr9 (129932887-129932242)
               


               
               1069-1212, gnl|bosTau2|chr11 (80651284-80651139)
               

               
               1069-1212, gnl|canFam2|chr9 (57116598-57116310)
               

               
               1069-1212, gnl|hg17|chr9 (129932032-129932223)
               

               
               1069-1212, gnl|Hg17|chr9 (129932206-129932069)
               

               
               1069-1212, gnl|loxAfr1|scaffold_26900 (11985-11804)
               

               
               1069-1212, gnl|oryCun1|scaffold_184048 (7668-7454)
               

               
               1069-1212, gnl|panTro1|chr11 (114801316-114801511)

	1-586, gnl\|bosTau2\|chr11 (80651903-80651324)
	1-586, gnl\|Hg17\|chr9 (129932887-129932242)

	1069-1212, gnl\|bosTau2\|chr11 (80651284-80651139)
	1069-1212, gnl\|canFam2\|chr9 (57116598-57116310)
	1069-1212, gnl\|hg17\|chr9 (129932032-129932223)
	1069-1212, gnl\|Hg17\|chr9 (129932206-129932069)
	1069-1212, gnl\|loxAfr1\|scaffold_26900 (11985-11804)
	1069-1212, gnl\|oryCun1\|scaffold_184048 (7668-7454)
	1069-1212, gnl\|panTro1\|chr11 (114801316-114801511)