Non-Coding RNA Search

Ss1.1-Spl1-SPL010002G09.5

Sequence:


               
               CTGCCCGCCCGCCGCCGCTTGGCCACTGCCGCCGCCGCCGCCGCGTCCCATTCATGAGGG
CCGCCCGGCTCTGCTGCGGCCCAGGCGGCTCCCGAGGCAGCGGCGGCGGCGGGTGCCTGG
GCCTCCAACGCGCCCCCGGCCGGCCCCGCCCCCTCGGCCACTCGAGAGCTCGCCCACCCG
GGCCGGTCCTCGTCGTTGCCTTCGTCCGACTGCCGCCTGCCCTCGGTTGCCCGCGGGCGC
CGGCGCGGGCCGGGAGCCGAGCCGCCGCAGTCTCAAACCATGAATTATGTGGGACAGCTG
GCCGGGCAGGTGATTGTCACTGTGAAGGAGCTCTACAAGGGCATTAACCAGGCCACCCTG
TCTGGGTGCATCGATGTCATCGTGGTGCGGCAGCAGGATGGCACCTACCAGTGCTCGCCT
TTCCACGTTCGCTTCGGGAAGCTGGGGGTCCTGAGGTCCAAGGAGAAGGTGATCGACATA
GAAATCAATGGCGATGCGGTGGATCTTCACATGAAGCTGGGGGACAACGGGGAAGCTTTC
TTTGTGGAGAAGAAACGAAGGAGGAAGAAGTGCAAACAGGACAGTAAGAAGGAAGAGCAG
ACCGCTTCTCCCGCTGCTGAAGATGCCGTGGGCGTGGACCTGAGCTCCGACGAGGACAAG
GGGCTGCAGGCGATAAGAGGATCTTCAAATGCTTCCTTAAAGGAAGAAGAATATAAGGAG
CCTCTGCTCTTCCACTCAGGAGATCACTACCCTCTATCTGATGGAGACTGGTCCCCTTTA
GACAACCCCTACTCCCCAGCAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCCGCCCGCCGCCGCTTGGCCACTGCCGCCGCCGCCGCCGCGTCCCATTCATGAGGG
CCGCCCGGCTCTGCTGCGGCCCAGGCGGCTCCCGAGGCAGCGGCGGCGGCGGGTGCCTGG
GCCTCCAACGCGCCCCCGGCCGGCCCCGCCCCCTCGGCCACTCGAGAGCTCGCCCACCCG
GGCCGGTCCTCGTCGTTGCCTTCGTCCGACTGCCGCCTGCCCTCGGTTGCCCGCGGGCGC
CGGCGCGGGCCGGGAGCCGAGCCGCCGCAGTCTCAAACCATGAATTATGTGGGACAGCTG
GCCGGGCAGGTGATTGTCACTGTGAAGGAGCTCTACAAGGGCATTAACCAGGCCACCCTG
TCTGGGTGCATCGATGTCATCGTGGTGCGGCAGCAGGATGGCACCTACCAGTGCTCGCCT
TTCCACGTTCGCTTCGGGAAGCTGGGGGTCCTGAGGTCCAAGGAGAAGGTGATCGACATA
GAAATCAATGGCGATGCGGTGGATCTTCACATGAAGCTGGGGGACAACGGGGAAGCTTTC
TTTGTGGAGAAGAAACGAAGGAGGAAGAAGTGCAAACAGGACAGTAAGAAGGAAGAGCAG
ACCGCTTCTCCCGCTGCTGAAGATGCCGTGGGCGTGGACCTGAGCTCCGACGAGGACAAG
GGGCTGCAGGCGATAAGAGGATCTTCAAATGCTTCCTTAAAGGAAGAAGAATATAAGGAG
CCTCTGCTCTTCCACTCAGGAGATCACTACCCTCTATCTGATGGAGACTGGTCCCCTTTA
GACAACCCCTACTCCCCAGCAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|53134959|emb|CAG32381.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|53134959|emb|CAG32381.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               676-785, - strand, RNAz p=0.967773

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               676-785, - strand, RNAz p=0.967773

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               263-471, gnl|bosTau2|chr11 (65490842-65491049)
               

               
               263-471, gnl|Hg17|chr2 (11856250-11856457)
               

               
               263-471, gnl|Mm7|chr12 (16635492-16635289)
               


               
               676-785, gnl|bosTau2|chr24 (27006503-27006612)
               

               
               676-785, gnl|Hg17|chr18 (2930712-2930603)
               

               
               676-785, gnl|Mm7|chr17 (69508669-69508778)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               263-471, gnl|bosTau2|chr11 (65490842-65491049)
               

               
               263-471, gnl|Hg17|chr2 (11856250-11856457)
               

               
               263-471, gnl|Mm7|chr12 (16635492-16635289)
               


               
               676-785, gnl|bosTau2|chr24 (27006503-27006612)
               

               
               676-785, gnl|Hg17|chr18 (2930712-2930603)
               

               
               676-785, gnl|Mm7|chr17 (69508669-69508778)

	263-471, gnl\|bosTau2\|chr11 (65490842-65491049)
	263-471, gnl\|Hg17\|chr2 (11856250-11856457)
	263-471, gnl\|Mm7\|chr12 (16635492-16635289)

	676-785, gnl\|bosTau2\|chr24 (27006503-27006612)
	676-785, gnl\|Hg17\|chr18 (2930712-2930603)
	676-785, gnl\|Mm7\|chr17 (69508669-69508778)