Non-Coding RNA Search

Ss1.1-Spl1-SPL010003B09.5

Sequence:


               
               AAGCACTGATTAGATTAATGTGTTGACCTGAAGTCCTATCCACCATTTGAAATATTTTTC
TTTGAACATACATTCTGAATAACAAATGCATTATATACAAATAAACATTAGAAACACAAC
TTTTTAAAAATTAGATTGCCTATCTGTAAAGCCCAGATTACATTTTTTTTAATATGCTAA
ATGTTTGTTTATTTAGCAAATCACAAATAAAAATACTTTGAGAAATTAAACTTCTGGGAA
AGATTGTTTAGAGTAAAGCTAATTTCCCGATAAAAACTGAGTCACTGATTTTTTTATTTA
TAATTTTTCCAATTTGATGTTCTGAGAAAGATATTCAGAAGAATATGCTATATGTACCTT
TGGTTTTTTAAAGGCCTTTTTTTTTGTTGTTCATTTGTTTTTGCTATCCCTACTTTTCTT
TTGCTTTGCAAGTGTTACTAGAAAATAATGGTAATTTTGTAGCTTTATGTAACACACATG
TGTGTAATTTTTAAACTTCATTTTGACTGAAGTACACTGTGAAAGGTTATAGTGACATTA
GCTATTCTCTTTCCTGTTTTTCTTGGTTTATTGCATTTAGTCTTCCTCCCTTCCTCCTGC
CACACATATGTGTTCTTTGTCTTCTCTGTCCAACTTTATTACAAATATTTCAATTCTATG
GAATGTATCATCCCTTAGGCTGCCTTTTACTTTGTCAGTAAGATAATCAGTTGTTTTTAA
TGTTCTTGCCTATTCTCTTTCTTCCTTCTCCTTAGATGACTTTTGTAGAAAACTCTTATT
GATCCCTTTTCCACATTGTGCTTTGACTTCTCAGAACATTGGAAAACCAAAAAGGAGCTG
GAGTAAAGAAGAGCCCTATGTTGTGTGGACAGTATCCTGTCAAAAGTGAGGGAAAGGAGC
TGAAGATAGTTGTACAACCTGAGACCCAGCACCGAGCTCGATACCTGACTGAGGGTAGTC
GTGGCTCAGTAAAGGACAGAACACAGCAAGGCTTTCCTACAGTAAAGGTAGTTATTTTAC
TTAGCAGTATATAGAGAATTTTATCCACTTTTACTTTTTAGTTATTTTGCTTTTAAACAA
TAAAAGCTGCCTAAAATAGAACTACTAGCTATATAAGAAATGAAAGTA------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------AGGCAAAAAGAC
CAAAAAAAAGAAAAGAAAGAAATGAAAGTAAAATTCTGACTGAATTGTAGGCTAAATATT
GTTACTCTGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCACTGATTAGATTAATGTGTTGACCTGAAGTCCTATCCACCATTTGAAATATTTTTC
TTTGAACATACATTCTGAATAACAAATGCATTATATACAAATAAACATTAGAAACACAAC
TTTTTAAAAATTAGATTGCCTATCTGTAAAGCCCAGATTACATTTTTTTTAATATGCTAA
ATGTTTGTTTATTTAGCAAATCACAAATAAAAATACTTTGAGAAATTAAACTTCTGGGAA
AGATTGTTTAGAGTAAAGCTAATTTCCCGATAAAAACTGAGTCACTGATTTTTTTATTTA
TAATTTTTCCAATTTGATGTTCTGAGAAAGATATTCAGAAGAATATGCTATATGTACCTT
TGGTTTTTTAAAGGCCTTTTTTTTTGTTGTTCATTTGTTTTTGCTATCCCTACTTTTCTT
TTGCTTTGCAAGTGTTACTAGAAAATAATGGTAATTTTGTAGCTTTATGTAACACACATG
TGTGTAATTTTTAAACTTCATTTTGACTGAAGTACACTGTGAAAGGTTATAGTGACATTA
GCTATTCTCTTTCCTGTTTTTCTTGGTTTATTGCATTTAGTCTTCCTCCCTTCCTCCTGC
CACACATATGTGTTCTTTGTCTTCTCTGTCCAACTTTATTACAAATATTTCAATTCTATG
GAATGTATCATCCCTTAGGCTGCCTTTTACTTTGTCAGTAAGATAATCAGTTGTTTTTAA
TGTTCTTGCCTATTCTCTTTCTTCCTTCTCCTTAGATGACTTTTGTAGAAAACTCTTATT
GATCCCTTTTCCACATTGTGCTTTGACTTCTCAGAACATTGGAAAACCAAAAAGGAGCTG
GAGTAAAGAAGAGCCCTATGTTGTGTGGACAGTATCCTGTCAAAAGTGAGGGAAAGGAGC
TGAAGATAGTTGTACAACCTGAGACCCAGCACCGAGCTCGATACCTGACTGAGGGTAGTC
GTGGCTCAGTAAAGGACAGAACACAGCAAGGCTTTCCTACAGTAAAGGTAGTTATTTTAC
TTAGCAGTATATAGAGAATTTTATCCACTTTTACTTTTTAGTTATTTTGCTTTTAAACAA
TAAAAGCTGCCTAAAATAGAACTACTAGCTATATAAGAAATGAAAGTA------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------AGGCAAAAAGAC
CAAAAAAAAGAAAAGAAAGAAATGAAAGTAAAATTCTGACTGAATTGTAGGCTAAATATT
GTTACTCTGATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               736-847, - strand, RNAz p=0.71538
               

               
               888-1007, + strand, RNAz p=0.709357

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               736-847, - strand, RNAz p=0.71538
               

               
               888-1007, + strand, RNAz p=0.709357

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               948-1020, + strand, RNAmicro p=0.959293

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               948-1020, + strand, RNAmicro p=0.959293

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               12-655, gnl|bosTau2|chr18 (30277557-30278187)
               

               
               12-655, gnl|Hg17|chr16 (68243451-68244415)
               


               
               657-1129, gnl|bosTau2|chr18 (30278345-30278820)
               

               
               657-1129, gnl|Hg17|chr16 (68244480-68244968)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-655, gnl|bosTau2|chr18 (30277557-30278187)
               

               
               12-655, gnl|Hg17|chr16 (68243451-68244415)
               


               
               657-1129, gnl|bosTau2|chr18 (30278345-30278820)
               

               
               657-1129, gnl|Hg17|chr16 (68244480-68244968)

	736-847, - strand, RNAz p=0.71538
	888-1007, + strand, RNAz p=0.709357

	12-655, gnl\|bosTau2\|chr18 (30277557-30278187)
	12-655, gnl\|Hg17\|chr16 (68243451-68244415)

	657-1129, gnl\|bosTau2\|chr18 (30278345-30278820)
	657-1129, gnl\|Hg17\|chr16 (68244480-68244968)