Ss1.1-Spl1-SPL010004B09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAGGATGTAATTTCTTATTTTTCATGTTAATTGTGAACATCTAGAAGGTCCTTTTAACT CCCAATCTGTTTTCCAGAACCATTTTTACAAGGTGCTTTTACAGAGCAGCAAAGGGCTAA GGCTATAGGCAAATGTGTAGGTGTACTATCCACGCTTCTAGGATTAGTTTTTTTGTTTTA AACTTTTGATTTTATTCCTCCTGCCTTGAGTTTTGTAACAGCCAGAGTTTGCCAGGAAGA CTCTATTAGCTATAGAACACATGCAAACTGCCCAGGCTCTGGAGGGTATGTTTCTGTCTC CAAGGGCAAGCTCTGCATGTAGCCTGAACCATCTTAGGGGAGTGGGGGAAGGCACCTGTG CCGTCAGACGTTGCCTAGCGTTAGAAGCGAGCTGGAATGCATGACCAACATCACCCTGGC AAATGTCATCCGACAGCTGGGCAGCCTGAGTAAATATGCCGAGGACATTTTTGGAGAGCT CTTTACTCAGGCAAATACTTTTGCCTCTCGGGTAAGCTCCCTTGCTGAGAGGGTCGACCG CCTACAAGTTAAAGTCACTCAGCTGGATCCCAAGGAAGAAGAAGTGTCACTACAAGGAAT CAACACCCGAAAGGCCTTCCGAAGCTCTACTGTTCAGGACCAGAAGCTTTTTGACAGAAA TTCTCTCCCCATACCTGTCTTGGAAACATACAACACCTGTGATACTCCTCCACCTCTCAA CAATCTTACCCCTTACAGGGACGATGGGAAAGAGGCACTCAAATTCTACACAGACCCTTC GTACTTCTTTGATCTTTGGAAGGAGAAGATGCTGCAGGACACCAAGGATATCATGAAAGA GAAGAGAAAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAGGATGTAATTTCTTATTTTTCATGTTAATTGTGAACATCTAGAAGGTCCTTTTAACT CCCAATCTGTTTTCCAGAACCATTTTTACAAGGTGCTTTTACAGAGCAGCAAAGGGCTAA GGCTATAGGCAAATGTGTAGGTGTACTATCCACGCTTCTAGGATTAGTTTTTTTGTTTTA AACTTTTGATTTTATTCCTCCTGCCTTGAGTTTTGTAACAGCCAGAGTTTGCCAGGAAGA CTCTATTAGCTATAGAACACATGCAAACTGCCCAGGCTCTGGAGGGTATGTTTCTGTCTC CAAGGGCAAGCTCTGCATGTAGCCTGAACCATCTTAGGGGAGTGGGGGAAGGCACCTGTG CCGTCAGACGTTGCCTAGCGTTAGAAGCGAGCTGGAATGCATGACCAACATCACCCTGGC AAATGTCATCCGACAGCTGGGCAGCCTGAGTAAATATGCCGAGGACATTTTTGGAGAGCT CTTTACTCAGGCAAATACTTTTGCCTCTCGGGTAAGCTCCCTTGCTGAGAGGGTCGACCG CCTACAAGTTAAAGTCACTCAGCTGGATCCCAAGGAAGAAGAAGTGTCACTACAAGGAAT CAACACCCGAAAGGCCTTCCGAAGCTCTACTGTTCAGGACCAGAAGCTTTTTGACAGAAA TTCTCTCCCCATACCTGTCTTGGAAACATACAACACCTGTGATACTCCTCCACCTCTCAA CAATCTTACCCCTTACAGGGACGATGGGAAAGAGGCACTCAAATTCTACACAGACCCTTC GTACTTCTTTGATCTTTGGAAGGAGAAGATGCTGCAGGACACCAAGGATATCATGAAAGA GAAGAGAAAGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 410-584, - strand, RNAz p=0.917548 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 410-584, - strand, RNAz p=0.917548 |
| Aligned organism(s): 68 entry(ies) | More info |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
| 1-584, gnl|bosTau2|chr2 (77983392-77983966) | |
| 1-584, gnl|Hg17|chr1 (27430406-27429597) | |
| 1-584, gnl|Mm7|chr4 (132563000-132563536) | |
| 736-851, gnl|bosTau2|chr2 (77986739-77986854) | |
| 736-851, gnl|canFam2|chr12 (69878160-69878068) | |
| 736-851, gnl|canFam2|chr12 (69878068-69878190) | |
| 736-851, gnl|canFam2|chr2 (75751366-75751231) | |
| 736-851, gnl|canFam2|chr2 (75751242-75751319) | |
| 736-851, gnl|danRer3|chr19 (69480751-69480884) | |
| 736-851, gnl|danRer3|chr19 (69480875-69480798) | |
| 736-851, gnl|danRer3|chrNA (65786918-65786796) | |
| 736-851, gnl|dasNov1|scaffold_234797 (116-205) | |
| 736-851, gnl|dasNov1|scaffold_7856 (46120-46001) | |
| 736-851, gnl|dasNov1|scaffold_9435 (18103-18238) | |
| 736-851, gnl|dasNov1|scaffold_9435 (18227-18150) | |
| 736-851, gnl|echTel1|scaffold_161789 (3593-3728) | |
| 736-851, gnl|echTel1|scaffold_161789 (3596-3718) | |
| 736-851, gnl|echTel1|scaffold_161789 (3717-3640) | |
| 736-851, gnl|fr1|chrUn (87023313-87023437) | |
| 736-851, gnl|fr1|chrUn (23010941-23010866) | |
| 736-851, gnl|fr1|chrUn (23010867-23010989) | |
| 736-851, gnl|fr1|chrUn (87023437-87023360) | |
| 736-851, gnl|galGal2|chr3 (65136081-65136155) | |
| 736-851, gnl|galGal2|chr3 (65136155-65136033) | |
| 736-851, gnl|galGal2|chrUn (145481957-145481822) | |
| 736-851, gnl|galGal2|chrUn (145480760-145480814) | |
| 736-851, gnl|hg17|chr1 (27426617-27426752) | |
| 736-851, gnl|Hg17|chr1 (27426741-27426626) | |
| 736-851, gnl|hg17|chr2 (108351782-108351884) | |
| 736-851, gnl|hg17|chr6 (110534972-110535094) | |
| 736-851, gnl|hg17|chrX (47419367-47419444) | |
| 736-851, gnl|loxAfr1|scaffold_1480 (124597-124732) | |
| 736-851, gnl|loxAfr1|scaffold_1480 (124721-124644) | |
| 736-851, gnl|loxAfr1|scaffold_22556 (22929-23025) | |
| 736-851, gnl|loxAfr1|scaffold_22556 (23021-22899) | |
| 736-851, gnl|mm7|chr10 (40750249-40750342) | |
| 736-851, gnl|mm7|chr10 (40750341-40750219) | |
| 736-851, gnl|mm7|chr4 (132567634-132567499) | |
| 736-851, gnl|mm7|chr4 (132567510-132567587) | |
| 736-851, gnl|Mm7|chr4 (132567508-132567623) | |
| 736-851, gnl|monDom2|scaffold_0 (110003612-110003704) | |
| 736-851, gnl|monDom2|scaffold_0 (110003704-110003582) | |
| 736-851, gnl|monDom2|scaffold_91 (5261021-5261156) | |
| 736-851, gnl|monDom2|scaffold_91 (5261141-5261068) | |
| 736-851, gnl|oryCun1|scaffold_158030 (21598-21691) | |
| 736-851, gnl|oryCun1|scaffold_192577 (75627-75749) | |
| 736-851, gnl|oryCun1|scaffold_95743 (908-773) | |
| 736-851, gnl|oryCun1|scaffold_95743 (784-861) | |
| 736-851, gnl|panTro1|chr12 (111442744-111442846) | |
| 736-851, gnl|panTro1|chr1_random (57074250-57074115) | |
| 736-851, gnl|panTro1|chr1_random (57074129-57074203) | |
| 736-851, gnl|panTro1|chr5 (112879239-112879361) | |
| 736-851, gnl|rheMac2|chr1 (30088955-30089090) | |
| 736-851, gnl|rheMac2|chr1 (30089076-30089002) | |
| 736-851, gnl|rheMac2|chr13 (107994183-107994285) | |
| 736-851, gnl|rheMac2|chr4 (153844645-153844523) | |
| 736-851, gnl|rn3|chr20_random (482757-482859) | |
| 736-851, gnl|rn3|chr20_random (482849-482727) | |
| 736-851, gnl|rn3|chr5 (151946385-151946520) | |
| 736-851, gnl|rn3|chr5 (151946509-151946432) | |
| 736-851, gnl|tetNig1|chr14 (2730178-2730103) | |
| 736-851, gnl|tetNig1|chr14 (2730104-2730226) | |
| 736-851, gnl|tetNig1|chr14 (2730225-2730148) | |
| 736-851, gnl|tetNig1|chr21 (1104649-1104784) | |
| 736-851, gnl|xenTro1|scaffold_174 (287964-287880) | |
| 736-851, gnl|xenTro1|scaffold_174 (287872-287994) | |
| 736-851, gnl|xenTro1|scaffold_98 (468518-468381) | |
| 736-851, gnl|xenTro1|scaffold_98 (468394-468471) |
| Aligned organism(s): 68 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-584, gnl|bosTau2|chr2 (77983392-77983966) | |
| 1-584, gnl|Hg17|chr1 (27430406-27429597) | |
| 1-584, gnl|Mm7|chr4 (132563000-132563536) | |
| 736-851, gnl|bosTau2|chr2 (77986739-77986854) | |
| 736-851, gnl|canFam2|chr12 (69878160-69878068) | |
| 736-851, gnl|canFam2|chr12 (69878068-69878190) | |
| 736-851, gnl|canFam2|chr2 (75751366-75751231) | |
| 736-851, gnl|canFam2|chr2 (75751242-75751319) | |
| 736-851, gnl|danRer3|chr19 (69480751-69480884) | |
| 736-851, gnl|danRer3|chr19 (69480875-69480798) | |
| 736-851, gnl|danRer3|chrNA (65786918-65786796) | |
| 736-851, gnl|dasNov1|scaffold_234797 (116-205) | |
| 736-851, gnl|dasNov1|scaffold_7856 (46120-46001) | |
| 736-851, gnl|dasNov1|scaffold_9435 (18103-18238) | |
| 736-851, gnl|dasNov1|scaffold_9435 (18227-18150) | |
| 736-851, gnl|echTel1|scaffold_161789 (3593-3728) | |
| 736-851, gnl|echTel1|scaffold_161789 (3596-3718) | |
| 736-851, gnl|echTel1|scaffold_161789 (3717-3640) | |
| 736-851, gnl|fr1|chrUn (87023313-87023437) | |
| 736-851, gnl|fr1|chrUn (23010941-23010866) | |
| 736-851, gnl|fr1|chrUn (23010867-23010989) | |
| 736-851, gnl|fr1|chrUn (87023437-87023360) | |
| 736-851, gnl|galGal2|chr3 (65136081-65136155) | |
| 736-851, gnl|galGal2|chr3 (65136155-65136033) | |
| 736-851, gnl|galGal2|chrUn (145481957-145481822) | |
| 736-851, gnl|galGal2|chrUn (145480760-145480814) | |
| 736-851, gnl|hg17|chr1 (27426617-27426752) | |
| 736-851, gnl|Hg17|chr1 (27426741-27426626) | |
| 736-851, gnl|hg17|chr2 (108351782-108351884) | |
| 736-851, gnl|hg17|chr6 (110534972-110535094) | |
| 736-851, gnl|hg17|chrX (47419367-47419444) | |
| 736-851, gnl|loxAfr1|scaffold_1480 (124597-124732) | |
| 736-851, gnl|loxAfr1|scaffold_1480 (124721-124644) | |
| 736-851, gnl|loxAfr1|scaffold_22556 (22929-23025) | |
| 736-851, gnl|loxAfr1|scaffold_22556 (23021-22899) | |
| 736-851, gnl|mm7|chr10 (40750249-40750342) | |
| 736-851, gnl|mm7|chr10 (40750341-40750219) | |
| 736-851, gnl|mm7|chr4 (132567634-132567499) | |
| 736-851, gnl|mm7|chr4 (132567510-132567587) | |
| 736-851, gnl|Mm7|chr4 (132567508-132567623) | |
| 736-851, gnl|monDom2|scaffold_0 (110003612-110003704) | |
| 736-851, gnl|monDom2|scaffold_0 (110003704-110003582) | |
| 736-851, gnl|monDom2|scaffold_91 (5261021-5261156) | |
| 736-851, gnl|monDom2|scaffold_91 (5261141-5261068) | |
| 736-851, gnl|oryCun1|scaffold_158030 (21598-21691) | |
| 736-851, gnl|oryCun1|scaffold_192577 (75627-75749) | |
| 736-851, gnl|oryCun1|scaffold_95743 (908-773) | |
| 736-851, gnl|oryCun1|scaffold_95743 (784-861) | |
| 736-851, gnl|panTro1|chr12 (111442744-111442846) | |
| 736-851, gnl|panTro1|chr1_random (57074250-57074115) | |
| 736-851, gnl|panTro1|chr1_random (57074129-57074203) | |
| 736-851, gnl|panTro1|chr5 (112879239-112879361) | |
| 736-851, gnl|rheMac2|chr1 (30088955-30089090) | |
| 736-851, gnl|rheMac2|chr1 (30089076-30089002) | |
| 736-851, gnl|rheMac2|chr13 (107994183-107994285) | |
| 736-851, gnl|rheMac2|chr4 (153844645-153844523) | |
| 736-851, gnl|rn3|chr20_random (482757-482859) | |
| 736-851, gnl|rn3|chr20_random (482849-482727) | |
| 736-851, gnl|rn3|chr5 (151946385-151946520) | |
| 736-851, gnl|rn3|chr5 (151946509-151946432) | |
| 736-851, gnl|tetNig1|chr14 (2730178-2730103) | |
| 736-851, gnl|tetNig1|chr14 (2730104-2730226) | |
| 736-851, gnl|tetNig1|chr14 (2730225-2730148) | |
| 736-851, gnl|tetNig1|chr21 (1104649-1104784) | |
| 736-851, gnl|xenTro1|scaffold_174 (287964-287880) | |
| 736-851, gnl|xenTro1|scaffold_174 (287872-287994) | |
| 736-851, gnl|xenTro1|scaffold_98 (468518-468381) | |
| 736-851, gnl|xenTro1|scaffold_98 (468394-468471) |