Ss1.1-Spl1-SPL010008G01.5
|
AGTGGCACGCCCTGCCGCCGCCATGGCGCGGGCGCTGTCCAGTCAGTCGCTGGTGGTGGT
GGTGGCTACTTCCCTTCAGGAAGCCCGGTCTCCGCCCCCTCCTCCCACCCCGTCTGCTCC
GCGGCGGAGGCGGCGGTGGCGGCAGCGGTTGTCCCTGCCTCTCCGCCACCTCCACCTCAG
CCTATCCCCCGACCGGTGGCGTTGGCGGGGAGGGGGGCCGTAGTTGTAGACGGCCGCCCC
TGCCTCAGAGAAGATACGACGTCGAATGAACAAAGACTGAACTTTTTACAGATACCTTTT
GGAAAAGGCTTGTAAGGAGTAGTGCCATAGTTTGAATCACAGTGGATTCCACGTTATGAG
GTGAATGGGAGAGGAGTATTGAACAAAAATAGATTTTTAAATCTCTGCATCATGGTTTTT
AGCTCCTCAGTGGTTGCACAGTCTCTCTATTTGGGGAAAGTTCATGCTAAAAAACTGAAG
CAATTAATGGGTGAATATGATCAAATTTCTCCACCAAGTTCTCAACCTGACAAGGAGAAT
CCCTTATTGTCAACCTAATGAAGCACTCAAAGAAGACATATGACTCTTTTCAAGATGAAC
TTGAAGATTATATTAAAGTGCAGAAAGCCAGAGGCTTAGAGCCAAAGACTTGTTTCAGAA
AGATGAGAGAGGATTATTTGGAAACCTGTGGGTACAAAGAAGAGGTTGATTCTAGACCCA
GGTGCAGAATGTTTGATCAGAGGCTCCCTTATGAAAGCATCCAGACCTACCCGAGATCAT
GTAGGGTTTCACAGACAGTGGAAAAAGCAGTTACCTCACTGGCTGCCAGCTCCGTGACAA
TAGGCTGAGACTAGGCTCCCTGAGCTACCCTCAGTTCCCCAGGGACTGCTTCTTGGGAGA
ACCAGTACCCCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTGGCACGCCCTGCCGCCGCCATGGCGCGGGCGCTGTCCAGTCAGTCGCTGGTGGTGGT
GGTGGCTACTTCCCTTCAGGAAGCCCGGTCTCCGCCCCCTCCTCCCACCCCGTCTGCTCC
GCGGCGGAGGCGGCGGTGGCGGCAGCGGTTGTCCCTGCCTCTCCGCCACCTCCACCTCAG
CCTATCCCCCGACCGGTGGCGTTGGCGGGGAGGGGGGCCGTAGTTGTAGACGGCCGCCCC
TGCCTCAGAGAAGATACGACGTCGAATGAACAAAGACTGAACTTTTTACAGATACCTTTT
GGAAAAGGCTTGTAAGGAGTAGTGCCATAGTTTGAATCACAGTGGATTCCACGTTATGAG
GTGAATGGGAGAGGAGTATTGAACAAAAATAGATTTTTAAATCTCTGCATCATGGTTTTT
AGCTCCTCAGTGGTTGCACAGTCTCTCTATTTGGGGAAAGTTCATGCTAAAAAACTGAAG
CAATTAATGGGTGAATATGATCAAATTTCTCCACCAAGTTCTCAACCTGACAAGGAGAAT
CCCTTATTGTCAACCTAATGAAGCACTCAAAGAAGACATATGACTCTTTTCAAGATGAAC
TTGAAGATTATATTAAAGTGCAGAAAGCCAGAGGCTTAGAGCCAAAGACTTGTTTCAGAA
AGATGAGAGAGGATTATTTGGAAACCTGTGGGTACAAAGAAGAGGTTGATTCTAGACCCA
GGTGCAGAATGTTTGATCAGAGGCTCCCTTATGAAAGCATCCAGACCTACCCGAGATCAT
GTAGGGTTTCACAGACAGTGGAAAAAGCAGTTACCTCACTGGCTGCCAGCTCCGTGACAA
TAGGCTGAGACTAGGCTCCCTGAGCTACCCTCAGTTCCCCAGGGACTGCTTCTTGGGAGA
ACCAGTACCCCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
16-253, gnl|bosTau2|chr11 (35640745-35640503) |
|
16-253, gnl|Hg17|chr2 (88194641-88194407) |
|
16-253, gnl|Mm7|chr6 (71289599-71289839) |
| |
|
345-535, gnl|bosTau2|chr11 (35630745-35630553) |
|
345-535, gnl|canFam2|chr17 (41383060-41382880) |
|
345-535, gnl|dasNov1|scaffold_31639 (11528-11348) |
|
345-535, gnl|echTel1|scaffold_54551 (3319-3493) |
|
345-535, gnl|hg17|chr2 (88172916-88173080) |
|
345-535, gnl|Hg17|chr2 (88173086-88172915) |
|
345-535, gnl|loxAfr1|scaffold_37608 (5145-4967) |
|
345-535, gnl|mm7|chr6 (71300317-71300145) |
|
345-535, gnl|Mm7|chr6 (71300137-71300316) |
|
345-535, gnl|monDom2|scaffold_63 (1146904-1147084) |
|
345-535, gnl|oryCun1|scaffold_212935 (176405-176227) |
|
345-535, gnl|panTro1|chr12 (91069460-91069624) |
|
345-535, gnl|rheMac2|chr13 (88522734-88522898) |
|
345-535, gnl|rn3|chr4 (104738361-104738189) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
16-253, gnl|bosTau2|chr11 (35640745-35640503) |
|
16-253, gnl|Hg17|chr2 (88194641-88194407) |
|
16-253, gnl|Mm7|chr6 (71289599-71289839) |
| |
|
345-535, gnl|bosTau2|chr11 (35630745-35630553) |
|
345-535, gnl|canFam2|chr17 (41383060-41382880) |
|
345-535, gnl|dasNov1|scaffold_31639 (11528-11348) |
|
345-535, gnl|echTel1|scaffold_54551 (3319-3493) |
|
345-535, gnl|hg17|chr2 (88172916-88173080) |
|
345-535, gnl|Hg17|chr2 (88173086-88172915) |
|
345-535, gnl|loxAfr1|scaffold_37608 (5145-4967) |
|
345-535, gnl|mm7|chr6 (71300317-71300145) |
|
345-535, gnl|Mm7|chr6 (71300137-71300316) |
|
345-535, gnl|monDom2|scaffold_63 (1146904-1147084) |
|
345-535, gnl|oryCun1|scaffold_212935 (176405-176227) |
|
345-535, gnl|panTro1|chr12 (91069460-91069624) |
|
345-535, gnl|rheMac2|chr13 (88522734-88522898) |
|
345-535, gnl|rn3|chr4 (104738361-104738189) |
