Non-Coding RNA Search

Ss1.1-Spl1-SPL010013C07.5

Sequence:


               
               GAGTCCAGCTAGTCTCGAGGCCAACTTCCACTTTCCTCTGGATGTTTTCACTTTTGGGGC
ATCTTGTTCTGAGTCAAGATTCCTTCTTCTGAACACGGGACTTTCCAAAAGGACCACAGC
TCCTTCCGTGTATCCACTCAACTTGGGATGTGTTGGATTTTGGTTGTTGAGGGAGCTCAC
CTGCCTCTCTGGAGTATGGCCGTGTGGTCCCTGTGGAGTCTACTTCTCTGCGAAGCACTA
TTTCCCGTCGTTGTCACCAGTGTCCAAGTGCAGGGCCAGGTGGGGGGCTCAGCCCTGCTG
GTGGCAGAACGCCCTCCTGGCTTCCAAGTCCGTGAGGCCATCTGGAGATGTCTCTGGCCT
TCAGAGGAGCTCCTGGCCACGTTTTTCCGGGACTCCCTGGAGACTCTTTACCACTCCCGC
TTCCTGGGCAGAACCCAACTGCACAGCAACCTCAGCCTGGAGCTCCGGCCGCTGGAGTCT
GGAGACAGCGGCAACTTCTCCGTGCTATTGGTGGACAAGGAAGGTCGGGCCTGGACACAG
ACTCTGCAGCTCAAGGTGTATGATGCAGTGCCCAGGCCCGTGGTGCAAGTGTTCATTGCC
ATATCAGGGGATGCTCAGCCCCTCAAGACCTGTCAAGTGTTCCTGTCCTGTTGGGCCCCC
AACATCAGCGACATAACCTATAGCTGGCGACGGGAGGGGACTCTTGACCTTGGTGTCGAG
CCAGGTGAACTTTTCATGGATAGACAGCTGCTGAGCGTCTCACTGGGACCAGGAGACAAA
GGCGTGGCCTATTCCTGCATCGTCTCAAACCCTGTCAGCTGGGACTTGGCCACCGTCACC
CCCTGGGAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTCCAGCTAGTCTCGAGGCCAACTTCCACTTTCCTCTGGATGTTTTCACTTTTGGGGC
ATCTTGTTCTGAGTCAAGATTCCTTCTTCTGAACACGGGACTTTCCAAAAGGACCACAGC
TCCTTCCGTGTATCCACTCAACTTGGGATGTGTTGGATTTTGGTTGTTGAGGGAGCTCAC
CTGCCTCTCTGGAGTATGGCCGTGTGGTCCCTGTGGAGTCTACTTCTCTGCGAAGCACTA
TTTCCCGTCGTTGTCACCAGTGTCCAAGTGCAGGGCCAGGTGGGGGGCTCAGCCCTGCTG
GTGGCAGAACGCCCTCCTGGCTTCCAAGTCCGTGAGGCCATCTGGAGATGTCTCTGGCCT
TCAGAGGAGCTCCTGGCCACGTTTTTCCGGGACTCCCTGGAGACTCTTTACCACTCCCGC
TTCCTGGGCAGAACCCAACTGCACAGCAACCTCAGCCTGGAGCTCCGGCCGCTGGAGTCT
GGAGACAGCGGCAACTTCTCCGTGCTATTGGTGGACAAGGAAGGTCGGGCCTGGACACAG
ACTCTGCAGCTCAAGGTGTATGATGCAGTGCCCAGGCCCGTGGTGCAAGTGTTCATTGCC
ATATCAGGGGATGCTCAGCCCCTCAAGACCTGTCAAGTGTTCCTGTCCTGTTGGGCCCCC
AACATCAGCGACATAACCTATAGCTGGCGACGGGAGGGGACTCTTGACCTTGGTGTCGAG
CCAGGTGAACTTTTCATGGATAGACAGCTGCTGAGCGTCTCACTGGGACCAGGAGACAAA
GGCGTGGCCTATTCCTGCATCGTCTCAAACCCTGTCAGCTGGGACTTGGCCACCGTCACC
CCCTGGGAGAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55665711|emb|CAH71103.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55665711|emb|CAH71103.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               353-472, - strand, RNAz p=0.971543

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-472, - strand, RNAz p=0.971543

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               234-570, gnl|bosTau2|chr3 (5612953-5612618)
               

               
               234-570, gnl|dasNov1|scaffold_5302 (78391-78808)
               

               
               234-570, gnl|hg17|chr1 (156612679-156613095)
               

               
               234-570, gnl|Hg17|chr1 (156612727-156613062)
               

               
               234-570, gnl|mm7|chr1 (172558459-172558048)
               

               
               234-570, gnl|Mm7|chr1 (172558410-172558075)
               

               
               234-570, gnl|monDom2|scaffold_13 (61957112-61956680)
               

               
               234-570, gnl|oryCun1|scaffold_212627 (76889-77308)
               

               
               234-570, gnl|panTro1|chr1 (138692579-138692995)
               

               
               234-570, gnl|rheMac2|chr1 (138443499-138443915)
               

               
               234-570, gnl|rn3|chr13 (88782488-88782034)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               234-570, gnl|bosTau2|chr3 (5612953-5612618)
               

               
               234-570, gnl|dasNov1|scaffold_5302 (78391-78808)
               

               
               234-570, gnl|hg17|chr1 (156612679-156613095)
               

               
               234-570, gnl|Hg17|chr1 (156612727-156613062)
               

               
               234-570, gnl|mm7|chr1 (172558459-172558048)
               

               
               234-570, gnl|Mm7|chr1 (172558410-172558075)
               

               
               234-570, gnl|monDom2|scaffold_13 (61957112-61956680)
               

               
               234-570, gnl|oryCun1|scaffold_212627 (76889-77308)
               

               
               234-570, gnl|panTro1|chr1 (138692579-138692995)
               

               
               234-570, gnl|rheMac2|chr1 (138443499-138443915)
               

               
               234-570, gnl|rn3|chr13 (88782488-88782034)

	234-570, gnl\|bosTau2\|chr3 (5612953-5612618)
	234-570, gnl\|dasNov1\|scaffold_5302 (78391-78808)
	234-570, gnl\|hg17\|chr1 (156612679-156613095)
	234-570, gnl\|Hg17\|chr1 (156612727-156613062)
	234-570, gnl\|mm7\|chr1 (172558459-172558048)
	234-570, gnl\|Mm7\|chr1 (172558410-172558075)
	234-570, gnl\|monDom2\|scaffold_13 (61957112-61956680)
	234-570, gnl\|oryCun1\|scaffold_212627 (76889-77308)
	234-570, gnl\|panTro1\|chr1 (138692579-138692995)
	234-570, gnl\|rheMac2\|chr1 (138443499-138443915)
	234-570, gnl\|rn3\|chr13 (88782488-88782034)