Non-Coding RNA Search

Ss1.1-Spl1-SPL010014E08.5

Sequence:


               
               ATTCTCCTCCCCTGTCTTTTCCTCAACTCTCCCCACCCCTACGCTCTCCGCCCCACTCGG
CTCCTGTCCTTCCCCTCCCGCTCTATCCGGGTCGCCGACGGCTGTCTCTGGACTGGACAG
CGGTGGCGGCTGCTTTTCTCTGAGGAGCCCGGTAAAGTTTCACAGGCGCCGGGGAGGGGA
GCAGCGGAACAGCTTCACTGACGCCGGAGGAGCTCTGGTGTTCGCCGCCACTGGCTGAAG
GAAGAGAGCCCGGGAGCTGGAGACCTGCCTCAGCTGCCGCGCTGCCTTGCTCTCGGGGAA
GGCGCCGCCCCCCGTCGCCCTGGGCTTCCCTTGCCTTGAGGGGCCGGACATAGGGATACC
TCCAACTTGCCAGTGTTTCAGAAGGGAGTTTTTATTGAAACTGGAAGACCAAGAGAATTA
CAAACATGTTGTGCTGGGGAAATGCATCTTTTGGACAGCTAGGCTTGGGTGGAATTGATG
AAGAAATCGTACTAGAGCCCAGAAAAAGTGACTTTTTTATAAATAAAAAGGTTCGAGATG
TAGGATGTGGACTCAGACATACAGTATTTGTTCTGGATGATGGAACAGTGTACACATGTG
GATGTAATGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAAGAAACCAGAGCAGGTTG
TTGCCCTGGATGCCCAAAATATCGTAGCTGTTTCATGTGGAGAAGCTCATACGTTAGCAC
TAAATGACAAGGGCCAGGTGTATGCTTGGGGTCTCGATTCTGATGGACAACTTGGCCTGC
TAGGAACAGAGGAATGTATCAGAGTACCCAGAAATATTAAAAGTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCTCCTCCCCTGTCTTTTCCTCAACTCTCCCCACCCCTACGCTCTCCGCCCCACTCGG
CTCCTGTCCTTCCCCTCCCGCTCTATCCGGGTCGCCGACGGCTGTCTCTGGACTGGACAG
CGGTGGCGGCTGCTTTTCTCTGAGGAGCCCGGTAAAGTTTCACAGGCGCCGGGGAGGGGA
GCAGCGGAACAGCTTCACTGACGCCGGAGGAGCTCTGGTGTTCGCCGCCACTGGCTGAAG
GAAGAGAGCCCGGGAGCTGGAGACCTGCCTCAGCTGCCGCGCTGCCTTGCTCTCGGGGAA
GGCGCCGCCCCCCGTCGCCCTGGGCTTCCCTTGCCTTGAGGGGCCGGACATAGGGATACC
TCCAACTTGCCAGTGTTTCAGAAGGGAGTTTTTATTGAAACTGGAAGACCAAGAGAATTA
CAAACATGTTGTGCTGGGGAAATGCATCTTTTGGACAGCTAGGCTTGGGTGGAATTGATG
AAGAAATCGTACTAGAGCCCAGAAAAAGTGACTTTTTTATAAATAAAAAGGTTCGAGATG
TAGGATGTGGACTCAGACATACAGTATTTGTTCTGGATGATGGAACAGTGTACACATGTG
GATGTAATGATCTAGGACAGCTAGGTCATGAAAAATCCAGAAAGAAACCAGAGCAGGTTG
TTGCCCTGGATGCCCAAAATATCGTAGCTGTTTCATGTGGAGAAGCTCATACGTTAGCAC
TAAATGACAAGGGCCAGGTGTATGCTTGGGGTCTCGATTCTGATGGACAACTTGGCCTGC
TAGGAACAGAGGAATGTATCAGAGTACCCAGAAATATTAAAAGTTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12844231|dbj|BAB26286.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12844231|dbj|BAB26286.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               465-660, + strand, RNAz p=0.976061

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               465-660, + strand, RNAz p=0.976061

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY650034, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY650034, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               347-660, gnl|bosTau2|chr28 (17140626-17140939)
               

               
               347-660, gnl|Hg17|chr10 (69502950-69502638)
               

               
               347-660, gnl|Mm7|chr10 (62764608-62764918)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               347-660, gnl|bosTau2|chr28 (17140626-17140939)
               

               
               347-660, gnl|Hg17|chr10 (69502950-69502638)
               

               
               347-660, gnl|Mm7|chr10 (62764608-62764918)

	347-660, gnl\|bosTau2\|chr28 (17140626-17140939)
	347-660, gnl\|Hg17\|chr10 (69502950-69502638)
	347-660, gnl\|Mm7\|chr10 (62764608-62764918)