Non-Coding RNA Search

Ss1.1-Spl1-SPL010017F11.5

Sequence:


               
               TTTTTTTTTTATAAGAACTAAGCAAAATGGGCCTTCCTCCTATTCCCAGAGTTCTGACAG
GCGGCGGCAGAAGCAGAGAACTGCTGGTCCCTGGAAACTGCCTGACTAGCAAGAAAACGC
AGGCACTGCCCTGGGCCGGTTTGGGGCAGCCTCCTCCCGGGGAGGTGCCGCCCGGGGGAG
TCCCGCCTGGAAGACGTCCGCCCTCCGGACTGACCAGTGGGGCGGCCAGTCTCGGGGGCG
GGGGCCGGGCGGCGGAGATGAGTCAGAGCAGCCTTGGCACAGCGCTGGCCCTTCCCGACC
GGCCCAGGGGCGTGCGCCGGGCGGGGCTGGAGCCTGGCCCAGCTTGGCCTGGAGAGGAAG
AACCAGGCCTGGGCAGCTCGGCACTGGCCGGCGCGGTCCGATGATGACCCCGGGGTCAGG
CCGGGCCCGGGCCGCGCGAGGAGGCGGCCGAGGCTGGCCTACCGCCCTCGCCCCGCGCGT
CCGCCCGCCAGAGGCCCACGGCCGGCTGTTACCTGCTGCCGCCGCTGCTCGGTGCACAGC
CGGGGGCGTCCGAGGCCCGCCGCGCCTCCCGGGCGCGCCCCCTTACTGCGTTGGGATCCG
GGGAGCGGCGGTCGGCGCCCGAGCCCGGGGCGCGCGGTGAGGAGCCTCGGGGCGGGACGA
GGTGAGCGAACGGACAATGCGGCCCGCGCAGAACCGCGCTGCGCGAGTGGGACCCGGCGG
CGCGCGCGTGGCCGAGTGTGTATATGTGCGCCTGTCGGTCAACGCTGACAGTCCGCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTATAAGAACTAAGCAAAATGGGCCTTCCTCCTATTCCCAGAGTTCTGACAG
GCGGCGGCAGAAGCAGAGAACTGCTGGTCCCTGGAAACTGCCTGACTAGCAAGAAAACGC
AGGCACTGCCCTGGGCCGGTTTGGGGCAGCCTCCTCCCGGGGAGGTGCCGCCCGGGGGAG
TCCCGCCTGGAAGACGTCCGCCCTCCGGACTGACCAGTGGGGCGGCCAGTCTCGGGGGCG
GGGGCCGGGCGGCGGAGATGAGTCAGAGCAGCCTTGGCACAGCGCTGGCCCTTCCCGACC
GGCCCAGGGGCGTGCGCCGGGCGGGGCTGGAGCCTGGCCCAGCTTGGCCTGGAGAGGAAG
AACCAGGCCTGGGCAGCTCGGCACTGGCCGGCGCGGTCCGATGATGACCCCGGGGTCAGG
CCGGGCCCGGGCCGCGCGAGGAGGCGGCCGAGGCTGGCCTACCGCCCTCGCCCCGCGCGT
CCGCCCGCCAGAGGCCCACGGCCGGCTGTTACCTGCTGCCGCCGCTGCTCGGTGCACAGC
CGGGGGCGTCCGAGGCCCGCCGCGCCTCCCGGGCGCGCCCCCTTACTGCGTTGGGATCCG
GGGAGCGGCGGTCGGCGCCCGAGCCCGGGGCGCGCGGTGAGGAGCCTCGGGGCGGGACGA
GGTGAGCGAACGGACAATGCGGCCCGCGCAGAACCGCGCTGCGCGAGTGGGACCCGGCGG
CGCGCGCGTGGCCGAGTGTGTATATGTGCGCCTGTCGGTCAACGCTGACAGTCCGCAGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               659-777, - strand, RNAz p=0.762847

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               659-777, - strand, RNAz p=0.762847

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-777, gnl|bosTau2|chr5 (69292839-69292072)
               

               
               5-777, gnl|Hg17|chr22 (37475850-37476551)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-777, gnl|bosTau2|chr5 (69292839-69292072)
               

               
               5-777, gnl|Hg17|chr22 (37475850-37476551)

	5-777, gnl\|bosTau2\|chr5 (69292839-69292072)
	5-777, gnl\|Hg17\|chr22 (37475850-37476551)