Non-Coding RNA Search

Ss1.1-Spl1-SPL010019C01.5

Sequence:


               
               TACAGGAGGGGGAGTCAGAACTGGCTGCAGAAGAAGAACTACAGCTGAGAGTGAACAATT
CAGTTCAGAATAGAGCACACTTCATGGTTAAAGAGCTCGACAGTGGCGTACTGAGCGAAC
AGATTCCAGCAAAAGAATTGGAAGAATCTGAGCCGGCTTGTGAGCCAGGTAGAGGGGAGG
AAATGCCAGCTGAAAAAGATGAGAACTGTGATCCCAAGAGCCAGGATGGGCAGGACAGCC
AGAGTCGGTGTAGCAAGCGGAGGATTCGGAGGTCTGTCAAACTGAAGGATTACAAACTCG
TTGGGGATGAAGATGACCAGGGTTCAGCCAGGAGGGTCTGTGGAAGGAGGAAGCGCCCTG
GGGGCCCTGAGGCCCGTTGTAAAGATTGCGGCAAAGTGTTTAAGTACAACCACTTTTTAG
CAATCCACCAGAGAAGCCACACGGGGGAGCGACCTTTCAAATGTAACGAGTGTGGCAAAG
GCTTCGCGCAGAAGCACTCCCTGCAGGTTCACACCCGGATGCACACAGGCGAGCGGCCCT
ACACCTGCACCGTGTGTGGCAAGGCTCTTACCACCAAGCACTCGCTGCTGGAGCACATGA
GTCTGCACTCAGGACAGAAGTCTTTTACCTGTGATCAGTGTGGAAAATATTTCAGCCAGA
AAAGACAACTAAAGAGCCATTACCGAGTTCATACAGGCCACTCATTACCGGAATGCAACC
ATTGCCACCGCAAATTCATGGATGTGTCTCAGCTAAAGAAACATCTACGAACACACACAG
GTGAGAAGCCATTTACGTGTGAAATCTGTGGCAAATCTTTCACAGCCAAGAGTTCTCTTC
AGACCCACATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAGGAGGGGGAGTCAGAACTGGCTGCAGAAGAAGAACTACAGCTGAGAGTGAACAATT
CAGTTCAGAATAGAGCACACTTCATGGTTAAAGAGCTCGACAGTGGCGTACTGAGCGAAC
AGATTCCAGCAAAAGAATTGGAAGAATCTGAGCCGGCTTGTGAGCCAGGTAGAGGGGAGG
AAATGCCAGCTGAAAAAGATGAGAACTGTGATCCCAAGAGCCAGGATGGGCAGGACAGCC
AGAGTCGGTGTAGCAAGCGGAGGATTCGGAGGTCTGTCAAACTGAAGGATTACAAACTCG
TTGGGGATGAAGATGACCAGGGTTCAGCCAGGAGGGTCTGTGGAAGGAGGAAGCGCCCTG
GGGGCCCTGAGGCCCGTTGTAAAGATTGCGGCAAAGTGTTTAAGTACAACCACTTTTTAG
CAATCCACCAGAGAAGCCACACGGGGGAGCGACCTTTCAAATGTAACGAGTGTGGCAAAG
GCTTCGCGCAGAAGCACTCCCTGCAGGTTCACACCCGGATGCACACAGGCGAGCGGCCCT
ACACCTGCACCGTGTGTGGCAAGGCTCTTACCACCAAGCACTCGCTGCTGGAGCACATGA
GTCTGCACTCAGGACAGAAGTCTTTTACCTGTGATCAGTGTGGAAAATATTTCAGCCAGA
AAAGACAACTAAAGAGCCATTACCGAGTTCATACAGGCCACTCATTACCGGAATGCAACC
ATTGCCACCGCAAATTCATGGATGTGTCTCAGCTAAAGAAACATCTACGAACACACACAG
GTGAGAAGCCATTTACGTGTGAAATCTGTGGCAAATCTTTCACAGCCAAGAGTTCTCTTC
AGACCCACATCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               476-595, - strand, RNAz p=0.938016
               

               
               483-602, - strand, RNAz p=0.829992

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               476-595, - strand, RNAz p=0.938016
               

               
               483-602, - strand, RNAz p=0.829992

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               489-593, - strand, RNAmicro p=0.922491

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               489-593, - strand, RNAmicro p=0.922491

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               444-613, gnl|bosTau2|chr9 (23100100-23099931)
               

               
               444-613, gnl|canFam2|chr12 (69413455-69413636)
               

               
               444-613, gnl|danRer3|chr20 (33416447-33416275)
               

               
               444-613, gnl|dasNov1|scaffold_19152 (2430-2612)
               

               
               444-613, gnl|echTel1|scaffold_55887 (3004-3185)
               

               
               444-613, gnl|fr1|chrUn (2505781-2505607)
               

               
               444-613, gnl|galGal2|chr3 (65318779-65318598)
               

               
               444-613, gnl|hg17|chr6 (109904657-109904838)
               

               
               444-613, gnl|Hg17|chr6 (109904827-109904658)
               

               
               444-613, gnl|loxAfr1|scaffold_8265 (48691-48863)
               

               
               444-613, gnl|mm7|chr10 (41265860-41265679)
               

               
               444-613, gnl|Mm7|chr10 (41265688-41265857)
               

               
               444-613, gnl|monDom2|scaffold_0 (110736677-110736496)
               

               
               444-613, gnl|oryCun1|scaffold_204508 (8342-8161)
               

               
               444-613, gnl|panTro1|chr5_random (3077739-3077558)
               

               
               444-613, gnl|rheMac2|chr4 (154430349-154430168)
               

               
               444-613, gnl|rn3|chr20 (45438400-45438219)
               

               
               444-613, gnl|tetNig1|chr10 (11099420-11099246)
               

               
               444-613, gnl|xenTro1|scaffold_773 (458532-458728)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               444-613, gnl|bosTau2|chr9 (23100100-23099931)
               

               
               444-613, gnl|canFam2|chr12 (69413455-69413636)
               

               
               444-613, gnl|danRer3|chr20 (33416447-33416275)
               

               
               444-613, gnl|dasNov1|scaffold_19152 (2430-2612)
               

               
               444-613, gnl|echTel1|scaffold_55887 (3004-3185)
               

               
               444-613, gnl|fr1|chrUn (2505781-2505607)
               

               
               444-613, gnl|galGal2|chr3 (65318779-65318598)
               

               
               444-613, gnl|hg17|chr6 (109904657-109904838)
               

               
               444-613, gnl|Hg17|chr6 (109904827-109904658)
               

               
               444-613, gnl|loxAfr1|scaffold_8265 (48691-48863)
               

               
               444-613, gnl|mm7|chr10 (41265860-41265679)
               

               
               444-613, gnl|Mm7|chr10 (41265688-41265857)
               

               
               444-613, gnl|monDom2|scaffold_0 (110736677-110736496)
               

               
               444-613, gnl|oryCun1|scaffold_204508 (8342-8161)
               

               
               444-613, gnl|panTro1|chr5_random (3077739-3077558)
               

               
               444-613, gnl|rheMac2|chr4 (154430349-154430168)
               

               
               444-613, gnl|rn3|chr20 (45438400-45438219)
               

               
               444-613, gnl|tetNig1|chr10 (11099420-11099246)
               

               
               444-613, gnl|xenTro1|scaffold_773 (458532-458728)

	476-595, - strand, RNAz p=0.938016
	483-602, - strand, RNAz p=0.829992

	444-613, gnl\|bosTau2\|chr9 (23100100-23099931)
	444-613, gnl\|canFam2\|chr12 (69413455-69413636)
	444-613, gnl\|danRer3\|chr20 (33416447-33416275)
	444-613, gnl\|dasNov1\|scaffold_19152 (2430-2612)
	444-613, gnl\|echTel1\|scaffold_55887 (3004-3185)
	444-613, gnl\|fr1\|chrUn (2505781-2505607)
	444-613, gnl\|galGal2\|chr3 (65318779-65318598)
	444-613, gnl\|hg17\|chr6 (109904657-109904838)
	444-613, gnl\|Hg17\|chr6 (109904827-109904658)
	444-613, gnl\|loxAfr1\|scaffold_8265 (48691-48863)
	444-613, gnl\|mm7\|chr10 (41265860-41265679)
	444-613, gnl\|Mm7\|chr10 (41265688-41265857)
	444-613, gnl\|monDom2\|scaffold_0 (110736677-110736496)
	444-613, gnl\|oryCun1\|scaffold_204508 (8342-8161)
	444-613, gnl\|panTro1\|chr5_random (3077739-3077558)
	444-613, gnl\|rheMac2\|chr4 (154430349-154430168)
	444-613, gnl\|rn3\|chr20 (45438400-45438219)
	444-613, gnl\|tetNig1\|chr10 (11099420-11099246)
	444-613, gnl\|xenTro1\|scaffold_773 (458532-458728)