Ss1.1-Spl1-SPL010019G12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTTTTTGCCCCCTTCCCTTTCAGCCTCGGGCGCGGGGGAGGCTCCGCAGACCTGCTGA CTGGGAACCGGTATGGCCGCGACGCTGGGCGGCGGGGAGCGCTGGACCGAAGCTTACATT GACGCAGTTAGAAGAAACAAATACCCAGAGGACAGACCTCCTGAAAGTCATGACCCCTGT GGTTGCTGTAACTGCATGAAGGCACAGAGTGAAAAGAAGCCTGAGAATGAGTGGACTCAG ACCCGACAGGGTGGGGGGAATGCCACTTACACTGAAGAGCAGTTGCTTGGAGTACAAAGG ATCAAGAAATGCAGAAATTACTATGAAATTCTGGGAGTTTCACGAAATGCCAGTGATGAA GAGCTTAAGAAAGCTTACCGAAAACTTGCCCTGAAATTTCATCCTGACAAGAACTGTGCT CCTGGAGCTACAGATGCTTTCAAAGCGATAGGAAATGCCTTTGCAGTCCTGAGCAATCCT GACAAGAGACTCCGCTATGATGAATATGGAGACGAACAGATGACTTTCACTGCCCCTCGA GCCAGACCATATAATTATTACAGGGACTTTGAAGCAGACATCACTCCAGAAGAGCTGTTC AACGTCTTCTTTGGAGGGCATTTTCCTACAGGAAACATTCATATGTTCTCAAATGTGACA GACGACACTCACTATTACCGCCGGCGGCACCGACATGAGAGGATGCAGACACGGAAGGAG GAGGAAGAAGATAAACCTCAGACTACATATTCTGCATTTATTCAGTTACTTCCAGTTCTG GTGATTGTGATCATATCTGTGATTACTCAGCTGCTAGCTGCTAATCCCCCGTATAGTCTG TTCTATAAATCGACCTTGGGCTACACCATTTCTAGAGAAACCCAAAACCTACAGGTGCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTTTTTGCCCCCTTCCCTTTCAGCCTCGGGCGCGGGGGAGGCTCCGCAGACCTGCTGA CTGGGAACCGGTATGGCCGCGACGCTGGGCGGCGGGGAGCGCTGGACCGAAGCTTACATT GACGCAGTTAGAAGAAACAAATACCCAGAGGACAGACCTCCTGAAAGTCATGACCCCTGT GGTTGCTGTAACTGCATGAAGGCACAGAGTGAAAAGAAGCCTGAGAATGAGTGGACTCAG ACCCGACAGGGTGGGGGGAATGCCACTTACACTGAAGAGCAGTTGCTTGGAGTACAAAGG ATCAAGAAATGCAGAAATTACTATGAAATTCTGGGAGTTTCACGAAATGCCAGTGATGAA GAGCTTAAGAAAGCTTACCGAAAACTTGCCCTGAAATTTCATCCTGACAAGAACTGTGCT CCTGGAGCTACAGATGCTTTCAAAGCGATAGGAAATGCCTTTGCAGTCCTGAGCAATCCT GACAAGAGACTCCGCTATGATGAATATGGAGACGAACAGATGACTTTCACTGCCCCTCGA GCCAGACCATATAATTATTACAGGGACTTTGAAGCAGACATCACTCCAGAAGAGCTGTTC AACGTCTTCTTTGGAGGGCATTTTCCTACAGGAAACATTCATATGTTCTCAAATGTGACA GACGACACTCACTATTACCGCCGGCGGCACCGACATGAGAGGATGCAGACACGGAAGGAG GAGGAAGAAGATAAACCTCAGACTACATATTCTGCATTTATTCAGTTACTTCCAGTTCTG GTGATTGTGATCATATCTGTGATTACTCAGCTGCTAGCTGCTAATCCCCCGTATAGTCTG TTCTATAAATCGACCTTGGGCTACACCATTTCTAGAGAAACCCAAAACCTACAGGTGCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 738-852, - strand, RNAz p=0.612756 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 738-852, - strand, RNAz p=0.612756 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 1-112, gnl|bosTau2|chr7 (45649570-45649681) | |
| 1-112, gnl|canFam2|chr2 (37608246-37608774) | |
| 1-112, gnl|dasNov1|scaffold_216477 (3924-4421) | |
| 1-112, gnl|hg17|chr5 (138802657-138803135) | |
| 1-112, gnl|Hg17|chr5 (138803103-138802994) | |
| 1-112, gnl|loxAfr1|scaffold_5645 (65427-65918) | |
| 1-112, gnl|mm7|chr18 (36078768-36079267) | |
| 1-112, gnl|Mm7|chr18 (36079235-36079127) | |
| 1-112, gnl|monDom2|scaffold_6 (69630586-69629985) | |
| 1-112, gnl|oryCun1|scaffold_190793 (12098-11600) | |
| 1-112, gnl|panTro1|chr4 (145407078-145407550) | |
| 1-112, gnl|rheMac2|chr6 (135864464-135864939) | |
| 1-112, gnl|rn3|chr18 (28347536-28348025) | |
| 298-445, gnl|bosTau2|chr28 (21990954-21990807) | |
| 298-445, gnl|canFam2|chr4 (26183390-26183566) | |
| 298-445, gnl|danRer3|chr13 (31324718-31324553) | |
| 298-445, gnl|dasNov1|scaffold_40481 (5682-5519) | |
| 298-445, gnl|echTel1|scaffold_298803 (7064-6893) | |
| 298-445, gnl|fr1|chrUn (20227268-20227099) | |
| 298-445, gnl|galGal2|chr6 (10716851-10716670) | |
| 298-445, gnl|hg17|chr10 (73773117-73773300) | |
| 298-445, gnl|Hg17|chr10 (73773277-73773130) | |
| 298-445, gnl|loxAfr1|scaffold_76358 (3783-3620) | |
| 298-445, gnl|mm7|chr10 (59409195-59409011) | |
| 298-445, gnl|Mm7|chr10 (59409033-59409180) | |
| 298-445, gnl|monDom2|scaffold_14 (386782-386965) | |
| 298-445, gnl|oryCun1|scaffold_180855 (319-137) | |
| 298-445, gnl|panTro1|chr8_random (39214206-39214023) | |
| 298-445, gnl|rheMac2|chr13 (65744819-65744955) | |
| 298-445, gnl|rn3|chr20 (27212085-27211901) | |
| 298-445, gnl|tetNig1|chr17 (5956720-5956551) | |
| 298-445, gnl|xenTro1|scaffold_785 (4008-4169) | |
| 738-852, gnl|bosTau2|chr7 (37319733-37319619) | |
| 738-852, gnl|canFam2|chr2 (37593095-37593223) | |
| 738-852, gnl|danRer3|chr21 (20142544-20142648) | |
| 738-852, gnl|dasNov1|scaffold_40481 (11320-11192) | |
| 738-852, gnl|echTel1|scaffold_312573 (53679-53807) | |
| 738-852, gnl|fr1|chrUn (4933992-4934111) | |
| 738-852, gnl|galGal2|chr13 (7110650-7110774) | |
| 738-852, gnl|hg17|chr5 (138786266-138786394) | |
| 738-852, gnl|Hg17|chr5 (138786409-138786295) | |
| 738-852, gnl|loxAfr1|scaffold_5645 (51333-51461) | |
| 738-852, gnl|mm7|chr18 (36057991-36058119) | |
| 738-852, gnl|Mm7|chr18 (36058134-36058020) | |
| 738-852, gnl|monDom2|scaffold_6 (69658354-69658227) | |
| 738-852, gnl|oryCun1|scaffold_175633 (48186-48314) | |
| 738-852, gnl|panTro1|chr4 (145389808-145389936) | |
| 738-852, gnl|rheMac2|chr6 (135846444-135846572) | |
| 738-852, gnl|rn3|chr18 (28326220-28326347) | |
| 738-852, gnl|tetNig1|chr7 (4062976-4062873) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-112, gnl|bosTau2|chr7 (45649570-45649681) | |
| 1-112, gnl|canFam2|chr2 (37608246-37608774) | |
| 1-112, gnl|dasNov1|scaffold_216477 (3924-4421) | |
| 1-112, gnl|hg17|chr5 (138802657-138803135) | |
| 1-112, gnl|Hg17|chr5 (138803103-138802994) | |
| 1-112, gnl|loxAfr1|scaffold_5645 (65427-65918) | |
| 1-112, gnl|mm7|chr18 (36078768-36079267) | |
| 1-112, gnl|Mm7|chr18 (36079235-36079127) | |
| 1-112, gnl|monDom2|scaffold_6 (69630586-69629985) | |
| 1-112, gnl|oryCun1|scaffold_190793 (12098-11600) | |
| 1-112, gnl|panTro1|chr4 (145407078-145407550) | |
| 1-112, gnl|rheMac2|chr6 (135864464-135864939) | |
| 1-112, gnl|rn3|chr18 (28347536-28348025) | |
| 298-445, gnl|bosTau2|chr28 (21990954-21990807) | |
| 298-445, gnl|canFam2|chr4 (26183390-26183566) | |
| 298-445, gnl|danRer3|chr13 (31324718-31324553) | |
| 298-445, gnl|dasNov1|scaffold_40481 (5682-5519) | |
| 298-445, gnl|echTel1|scaffold_298803 (7064-6893) | |
| 298-445, gnl|fr1|chrUn (20227268-20227099) | |
| 298-445, gnl|galGal2|chr6 (10716851-10716670) | |
| 298-445, gnl|hg17|chr10 (73773117-73773300) | |
| 298-445, gnl|Hg17|chr10 (73773277-73773130) | |
| 298-445, gnl|loxAfr1|scaffold_76358 (3783-3620) | |
| 298-445, gnl|mm7|chr10 (59409195-59409011) | |
| 298-445, gnl|Mm7|chr10 (59409033-59409180) | |
| 298-445, gnl|monDom2|scaffold_14 (386782-386965) | |
| 298-445, gnl|oryCun1|scaffold_180855 (319-137) | |
| 298-445, gnl|panTro1|chr8_random (39214206-39214023) | |
| 298-445, gnl|rheMac2|chr13 (65744819-65744955) | |
| 298-445, gnl|rn3|chr20 (27212085-27211901) | |
| 298-445, gnl|tetNig1|chr17 (5956720-5956551) | |
| 298-445, gnl|xenTro1|scaffold_785 (4008-4169) | |
| 738-852, gnl|bosTau2|chr7 (37319733-37319619) | |
| 738-852, gnl|canFam2|chr2 (37593095-37593223) | |
| 738-852, gnl|danRer3|chr21 (20142544-20142648) | |
| 738-852, gnl|dasNov1|scaffold_40481 (11320-11192) | |
| 738-852, gnl|echTel1|scaffold_312573 (53679-53807) | |
| 738-852, gnl|fr1|chrUn (4933992-4934111) | |
| 738-852, gnl|galGal2|chr13 (7110650-7110774) | |
| 738-852, gnl|hg17|chr5 (138786266-138786394) | |
| 738-852, gnl|Hg17|chr5 (138786409-138786295) | |
| 738-852, gnl|loxAfr1|scaffold_5645 (51333-51461) | |
| 738-852, gnl|mm7|chr18 (36057991-36058119) | |
| 738-852, gnl|Mm7|chr18 (36058134-36058020) | |
| 738-852, gnl|monDom2|scaffold_6 (69658354-69658227) | |
| 738-852, gnl|oryCun1|scaffold_175633 (48186-48314) | |
| 738-852, gnl|panTro1|chr4 (145389808-145389936) | |
| 738-852, gnl|rheMac2|chr6 (135846444-135846572) | |
| 738-852, gnl|rn3|chr18 (28326220-28326347) | |
| 738-852, gnl|tetNig1|chr7 (4062976-4062873) |