Non-Coding RNA Search

Ss1.1-Spl1-SPL010021F02.5

Sequence:


               
               CGTGATGTGGGGAAGAGAGGTCCCCGTTGGGTGAGGAATCGGAAAGGCCCGCCCAGATTT
GGGCCCCCAGCTCTTCTTCCCTGGGCCGGGGGCGCAGGCGAAGCTGGGGCCAGCGGGCAC
CGAGCGGCGCCGGCGGGACTGAGGCCGCAGAGGGCGGCGAGGCGGGGCTGGGCGGCCAAG
CAGCCATGCCTACCTGGGGGGCTGGCTCCTCGTCCCCTGACCGCTTTGCCGTGTCTGCGG
AGGCCGAGGACAAGGTGCGGGAGCAACAGCCCCATGTGGAACGCATCTTCAGGGTGGGGA
TGAGCGTCCTCCCCAAGGACTGTCCCGAGAACCCTCACATCTGGCTGCAGCTGGAGGGCC
CCAAGGAGAACGCCAGCAGAGCCAAGGAGTACTTGAAGGGTCTCTGCAACCCGGAGCTGC
AGAATGAAATCCACTACCCACCCAAACTGCACTGCATCTTCCTAGGAGCCCAGGGCTTCT
TCCTTGATTGCCTGGCCTGGAGCACATCAGCCCATCTGGTGCCTGGGGCACCCGGTTCTC
TGATGGTCAGTGGCCTGACTGAGGCCTTCGTCATGGTCCAGAGCCGAGTGGAGGAGCTGG
TGGAGCGGTTGAGCTGGGAGTTTCTGCCAGGGCCGTCCCCTGGAGCTTCTCAGTGTGCTG
GAGTTCTGAGAGACTTCTCTGCCCTGCTGCAGTCCCGGGTGGATGCCTACACAGAGGCCC
TGCTGCAGCTGCCCCTGGCCATCCAGGAGGAACTGCTGAGCCTGGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGATGTGGGGAAGAGAGGTCCCCGTTGGGTGAGGAATCGGAAAGGCCCGCCCAGATTT
GGGCCCCCAGCTCTTCTTCCCTGGGCCGGGGGCGCAGGCGAAGCTGGGGCCAGCGGGCAC
CGAGCGGCGCCGGCGGGACTGAGGCCGCAGAGGGCGGCGAGGCGGGGCTGGGCGGCCAAG
CAGCCATGCCTACCTGGGGGGCTGGCTCCTCGTCCCCTGACCGCTTTGCCGTGTCTGCGG
AGGCCGAGGACAAGGTGCGGGAGCAACAGCCCCATGTGGAACGCATCTTCAGGGTGGGGA
TGAGCGTCCTCCCCAAGGACTGTCCCGAGAACCCTCACATCTGGCTGCAGCTGGAGGGCC
CCAAGGAGAACGCCAGCAGAGCCAAGGAGTACTTGAAGGGTCTCTGCAACCCGGAGCTGC
AGAATGAAATCCACTACCCACCCAAACTGCACTGCATCTTCCTAGGAGCCCAGGGCTTCT
TCCTTGATTGCCTGGCCTGGAGCACATCAGCCCATCTGGTGCCTGGGGCACCCGGTTCTC
TGATGGTCAGTGGCCTGACTGAGGCCTTCGTCATGGTCCAGAGCCGAGTGGAGGAGCTGG
TGGAGCGGTTGAGCTGGGAGTTTCTGCCAGGGCCGTCCCCTGGAGCTTCTCAGTGTGCTG
GAGTTCTGAGAGACTTCTCTGCCCTGCTGCAGTCCCGGGTGGATGCCTACACAGAGGCCC
TGCTGCAGCTGCCCCTGGCCATCCAGGAGGAACTGCTGAGCCTGGTGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26336901|dbj|BAC32134.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26336901|dbj|BAC32134.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-118, + strand, RNAz p=0.540871

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-118, + strand, RNAz p=0.540871

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015299, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015299, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-166, gnl|bosTau2|chr10 (11892296-11892460)
               

               
               2-166, gnl|Hg17|chr14 (23969009-23969166)
               

               
               2-166, gnl|Mm7|chr14 (50752336-50752496)
               


               
               382-768, gnl|bosTau2|chr10 (11894133-11894519)
               

               
               382-768, gnl|Hg17|chr14 (23970501-23970890)
               

               
               382-768, gnl|Mm7|chr14 (50753843-50754226)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-166, gnl|bosTau2|chr10 (11892296-11892460)
               

               
               2-166, gnl|Hg17|chr14 (23969009-23969166)
               

               
               2-166, gnl|Mm7|chr14 (50752336-50752496)
               


               
               382-768, gnl|bosTau2|chr10 (11894133-11894519)
               

               
               382-768, gnl|Hg17|chr14 (23970501-23970890)
               

               
               382-768, gnl|Mm7|chr14 (50753843-50754226)

	2-166, gnl\|bosTau2\|chr10 (11892296-11892460)
	2-166, gnl\|Hg17\|chr14 (23969009-23969166)
	2-166, gnl\|Mm7\|chr14 (50752336-50752496)

	382-768, gnl\|bosTau2\|chr10 (11894133-11894519)
	382-768, gnl\|Hg17\|chr14 (23970501-23970890)
	382-768, gnl\|Mm7\|chr14 (50753843-50754226)