Non-Coding RNA Search

Ss1.1-Spl1-SPL010023A07.5

Sequence:


               
               GGCGGCGGTGGGAGTCACGGGAGAGGCCCAGGGATGAGACGAAGCAGGCCAGAGGCGTGG
TCCTCCCGGCGGGGGGTGGGCGGGACGTGAGCTGTGGGAGACCCCAGCAGGAGTGGCAGT
GATCCAGCCATGACCATCCAAACCTGGCCCCAAGAAGCACCTCCCGATGGGAGGGATTTT
CCCAGCATGCCTAGCAGAAGCGGTCCACAGGAGGACCACTTCTGTGTGTGTTTGTGTGTT
TGGGGCCGGGGGAGGTGAGAAGGGAGGTGTCTCCATGAGAATAGAACTAGGAAGACTGGG
AGGGGGCAAAAAATGACCTGTAGAATCTCTCCCTGCCCTCCCTCAGCCCTCCCCCCTATG
GTGAACCACCAGAGCCTTCCCACCACCACCCCGGCAGGGATGGAAAGCTGTCAAGAGGTC
CCCATTACCATCGCCAAAGAAGAAAATTCCCAACGGCACCGCTTCACAGATGAGGAGGTC
CAGAAGAACAGGTTCCAGATGCCCCCCTTGGAGGAAGGCCCAGGACTGGAAGAAATGCAG
GATTCCCAGGTCCCACCTGACAACCCTGGACAATGCAAAGCACAGCCCCCCTCCCTGGGC
TCTCAGCAGCCCCCCAGCAAAAGAGGCTCCAGCACATCTTCGGGGGAAGAGTACTGTAAC
AGCCCCAGCAGCAGGCTACCTCCATGGAACTCTCACGTGTTTTCTTCAGAGCAGGACCCC
CTCCTGGAGCCGTCCCCGAACTTGGAGCTGGCTGGCTCCCAGACAACTTTTCCAGCACCC
TCGGCTGATGACAGCTCCAGCACCTCGTCCGGGGAGTGGTACCAGAACTACCAGCCGCCG
CCCCAGCTCCCTTCTGCCGAGCAGTTTGGATGTGCAGGGTTCCCCAGACCCCCGTCTGAC
TCCTCCTCTGATGAAGACTATGATGACATCGGAGCCGCCTAGCCCAAGCCCAGAGTGGCT
CCGTGTGCTCCCTCTGGGACTCCTGCTCTGCCTCCTCCCCCTGACCCACCTCCCGCCCTT
CGTCCTTCCGGGATCATCCCCCAGGGGCCCAGAGGCCCTCCATCCATCAATAGAAGCTGC
CGGCACCGCCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCGGTGGGAGTCACGGGAGAGGCCCAGGGATGAGACGAAGCAGGCCAGAGGCGTGG
TCCTCCCGGCGGGGGGTGGGCGGGACGTGAGCTGTGGGAGACCCCAGCAGGAGTGGCAGT
GATCCAGCCATGACCATCCAAACCTGGCCCCAAGAAGCACCTCCCGATGGGAGGGATTTT
CCCAGCATGCCTAGCAGAAGCGGTCCACAGGAGGACCACTTCTGTGTGTGTTTGTGTGTT
TGGGGCCGGGGGAGGTGAGAAGGGAGGTGTCTCCATGAGAATAGAACTAGGAAGACTGGG
AGGGGGCAAAAAATGACCTGTAGAATCTCTCCCTGCCCTCCCTCAGCCCTCCCCCCTATG
GTGAACCACCAGAGCCTTCCCACCACCACCCCGGCAGGGATGGAAAGCTGTCAAGAGGTC
CCCATTACCATCGCCAAAGAAGAAAATTCCCAACGGCACCGCTTCACAGATGAGGAGGTC
CAGAAGAACAGGTTCCAGATGCCCCCCTTGGAGGAAGGCCCAGGACTGGAAGAAATGCAG
GATTCCCAGGTCCCACCTGACAACCCTGGACAATGCAAAGCACAGCCCCCCTCCCTGGGC
TCTCAGCAGCCCCCCAGCAAAAGAGGCTCCAGCACATCTTCGGGGGAAGAGTACTGTAAC
AGCCCCAGCAGCAGGCTACCTCCATGGAACTCTCACGTGTTTTCTTCAGAGCAGGACCCC
CTCCTGGAGCCGTCCCCGAACTTGGAGCTGGCTGGCTCCCAGACAACTTTTCCAGCACCC
TCGGCTGATGACAGCTCCAGCACCTCGTCCGGGGAGTGGTACCAGAACTACCAGCCGCCG
CCCCAGCTCCCTTCTGCCGAGCAGTTTGGATGTGCAGGGTTCCCCAGACCCCCGTCTGAC
TCCTCCTCTGATGAAGACTATGATGACATCGGAGCCGCCTAGCCCAAGCCCAGAGTGGCT
CCGTGTGCTCCCTCTGGGACTCCTGCTCTGCCTCCTCCCCCTGACCCACCTCCCGCCCTT
CGTCCTTCCGGGATCATCCCCCAGGGGCCCAGAGGCCCTCCATCCATCAATAGAAGCTGC
CGGCACCGCCCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               128-233, - strand, RNAz p=0.968671
               

               
               248-383, - strand, RNAz p=0.976574

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               128-233, - strand, RNAz p=0.968671
               

               
               248-383, - strand, RNAz p=0.976574

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               348-417, - strand, RNAmicro p=0.999947

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               348-417, - strand, RNAmicro p=0.999947

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               9-442, gnl|bosTau2|chr29 (28225904-28225480)
               

               
               9-442, gnl|Hg17|chr11 (60537627-60538062)
               

               
               9-442, gnl|Mm7|chr19 (10474673-10474267)
               


               
               516-775, gnl|bosTau2|chr29 (28222263-28221995)
               

               
               516-775, gnl|canFam2|chr18 (58328274-58327987)
               

               
               516-775, gnl|dasNov1|scaffold_58534 (6625-6908)
               

               
               516-775, gnl|hg17|chr11 (60541696-60541981)
               

               
               516-775, gnl|Hg17|chr11 (60541798-60542061)
               

               
               516-775, gnl|loxAfr1|scaffold_5676 (22007-22445)
               

               
               516-775, gnl|mm7|chr19 (10471395-10471123)
               

               
               516-775, gnl|Mm7|chr19 (10471303-10471041)
               

               
               516-775, gnl|monDom2|scaffold_33 (28058604-28058861)
               

               
               516-775, gnl|oryCun1|scaffold_207583 (64659-64913)
               

               
               516-775, gnl|panTro1|chr9 (61476603-61476888)
               

               
               516-775, gnl|rheMac2|chr14 (13099911-13099626)
               

               
               516-775, gnl|rn3|chr1 (213451262-213450991)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-442, gnl|bosTau2|chr29 (28225904-28225480)
               

               
               9-442, gnl|Hg17|chr11 (60537627-60538062)
               

               
               9-442, gnl|Mm7|chr19 (10474673-10474267)
               


               
               516-775, gnl|bosTau2|chr29 (28222263-28221995)
               

               
               516-775, gnl|canFam2|chr18 (58328274-58327987)
               

               
               516-775, gnl|dasNov1|scaffold_58534 (6625-6908)
               

               
               516-775, gnl|hg17|chr11 (60541696-60541981)
               

               
               516-775, gnl|Hg17|chr11 (60541798-60542061)
               

               
               516-775, gnl|loxAfr1|scaffold_5676 (22007-22445)
               

               
               516-775, gnl|mm7|chr19 (10471395-10471123)
               

               
               516-775, gnl|Mm7|chr19 (10471303-10471041)
               

               
               516-775, gnl|monDom2|scaffold_33 (28058604-28058861)
               

               
               516-775, gnl|oryCun1|scaffold_207583 (64659-64913)
               

               
               516-775, gnl|panTro1|chr9 (61476603-61476888)
               

               
               516-775, gnl|rheMac2|chr14 (13099911-13099626)
               

               
               516-775, gnl|rn3|chr1 (213451262-213450991)

	128-233, - strand, RNAz p=0.968671
	248-383, - strand, RNAz p=0.976574

	9-442, gnl\|bosTau2\|chr29 (28225904-28225480)
	9-442, gnl\|Hg17\|chr11 (60537627-60538062)
	9-442, gnl\|Mm7\|chr19 (10474673-10474267)

	516-775, gnl\|bosTau2\|chr29 (28222263-28221995)
	516-775, gnl\|canFam2\|chr18 (58328274-58327987)
	516-775, gnl\|dasNov1\|scaffold_58534 (6625-6908)
	516-775, gnl\|hg17\|chr11 (60541696-60541981)
	516-775, gnl\|Hg17\|chr11 (60541798-60542061)
	516-775, gnl\|loxAfr1\|scaffold_5676 (22007-22445)
	516-775, gnl\|mm7\|chr19 (10471395-10471123)
	516-775, gnl\|Mm7\|chr19 (10471303-10471041)
	516-775, gnl\|monDom2\|scaffold_33 (28058604-28058861)
	516-775, gnl\|oryCun1\|scaffold_207583 (64659-64913)
	516-775, gnl\|panTro1\|chr9 (61476603-61476888)
	516-775, gnl\|rheMac2\|chr14 (13099911-13099626)
	516-775, gnl\|rn3\|chr1 (213451262-213450991)