Non-Coding RNA Search

Ss1.1-Spl1-SPL010025D05.5

Sequence:


               
               GCATCTGCATGTAAACCTTCATAGCGTAGTGTTCAACAGAGCTGTATGGGCTCAGATATG
ATAGCAGATAACAAGGGAAAATTGTCAACATCTTTTATGCTGAATATAATTCGTAAATAA
TGTTAGCTGTTCACAATGCAATTGGCGGAAAATGGTGTATATCTAGAAAATATATTTTTA
GCATTAAATAATTGGAAGTTAAAAGATAAGTGGGTTGCAAACAATTAAGATGAAGCAAGG
ATTTTGGATAAGAACTTGACAAAAGCTTGCTTGCATCTTTGTGTGGCTGTGGCAAAGATT
TTTGCACGGATGCATTTTATATAAAAATTACTGAGTTACTAAAGTTTCTGGCTTGATTCA
TTTAGTTGGCTTTTTCTCCCCTCTTTTAAATGGTGGAGGTTCTCTTAGGGAGAGTAGTTT
CAAGTAACTTCTGAGAATGAAGTCTTTGTAATTTGATGCTGTTCAACAGCGTAACTATTG
TTGTACGTTCCTGTCAGGGAAAGATAATCATTGCAATACTTTTATTGTATGGCCTCTTAA
TATGTGACAAGGACTTTTATGAAGAATGCCTTTTTTCCTTTTAAATGTTCTTTTGGAAGT
CCTTTACCCTCCTGACCCAACCGAAGATTATGGTGGTTTTTAAAAAGATTCAAATGAGTT
TTTATTCTTTTCTTGGCTCATTTGCTGTACAACGTCTTATTTTTTAAAAAGCTTCTGGAA
TCGTATATTTTAGATTTTCTGTCACAGAAAGTGGGGGAAGAAATTAACAGAAAAGTGCCA
TCTCACTGAGTCCAGGATGTGTACAGTTTTTGGAGAACGAGGATATTGCAGCCTGAAATG
TTAAGATTGAAGAACTAATTGTTCTGAAGGTATTTGCCCCTCATCTCAGAAAAGAAGGCA
AACATGCAGAATGGATAAATGTAATCCTTTGTACTTTTACCACCTACATTTTTCGACTGC
AGTGACTCTGATTTCTCTAGAAAGGTCAGAGGTTTCAGACAGAAAGCTTTGTGATTCTTC
AAAGAGAGACATTTTCCATTTTGCTATATAAAGACTGATTATGCATAGCTTTTTACTTTA
TTTGCACTTGAGCCTTGGAGGTGCTGGCCTGGGAGTGGTGCTGAGTAAGTGAGGCCAGGT
CATGAGACAGCAGAACTGGAGGGAGGCAGATTGGAGAGGAACATGGACGGACGGTTAGAG
ATTCACATGTTCGGCCCTTCCTCACCAATCACCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATCTGCATGTAAACCTTCATAGCGTAGTGTTCAACAGAGCTGTATGGGCTCAGATATG
ATAGCAGATAACAAGGGAAAATTGTCAACATCTTTTATGCTGAATATAATTCGTAAATAA
TGTTAGCTGTTCACAATGCAATTGGCGGAAAATGGTGTATATCTAGAAAATATATTTTTA
GCATTAAATAATTGGAAGTTAAAAGATAAGTGGGTTGCAAACAATTAAGATGAAGCAAGG
ATTTTGGATAAGAACTTGACAAAAGCTTGCTTGCATCTTTGTGTGGCTGTGGCAAAGATT
TTTGCACGGATGCATTTTATATAAAAATTACTGAGTTACTAAAGTTTCTGGCTTGATTCA
TTTAGTTGGCTTTTTCTCCCCTCTTTTAAATGGTGGAGGTTCTCTTAGGGAGAGTAGTTT
CAAGTAACTTCTGAGAATGAAGTCTTTGTAATTTGATGCTGTTCAACAGCGTAACTATTG
TTGTACGTTCCTGTCAGGGAAAGATAATCATTGCAATACTTTTATTGTATGGCCTCTTAA
TATGTGACAAGGACTTTTATGAAGAATGCCTTTTTTCCTTTTAAATGTTCTTTTGGAAGT
CCTTTACCCTCCTGACCCAACCGAAGATTATGGTGGTTTTTAAAAAGATTCAAATGAGTT
TTTATTCTTTTCTTGGCTCATTTGCTGTACAACGTCTTATTTTTTAAAAAGCTTCTGGAA
TCGTATATTTTAGATTTTCTGTCACAGAAAGTGGGGGAAGAAATTAACAGAAAAGTGCCA
TCTCACTGAGTCCAGGATGTGTACAGTTTTTGGAGAACGAGGATATTGCAGCCTGAAATG
TTAAGATTGAAGAACTAATTGTTCTGAAGGTATTTGCCCCTCATCTCAGAAAAGAAGGCA
AACATGCAGAATGGATAAATGTAATCCTTTGTACTTTTACCACCTACATTTTTCGACTGC
AGTGACTCTGATTTCTCTAGAAAGGTCAGAGGTTTCAGACAGAAAGCTTTGTGATTCTTC
AAAGAGAGACATTTTCCATTTTGCTATATAAAGACTGATTATGCATAGCTTTTTACTTTA
TTTGCACTTGAGCCTTGGAGGTGCTGGCCTGGGAGTGGTGCTGAGTAAGTGAGGCCAGGT
CATGAGACAGCAGAACTGGAGGGAGGCAGATTGGAGAGGAACATGGACGGACGGTTAGAG
ATTCACATGTTCGGCCCTTCCTCACCAATCACCTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               453-612, + strand, RNAz p=0.901604
               

               
               808-903, - strand, RNAz p=0.642824

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               453-612, + strand, RNAz p=0.901604
               

               
               808-903, - strand, RNAz p=0.642824

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               507-571, + strand, RNAmicro p=0.9349

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               507-571, + strand, RNAmicro p=0.9349

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               32-1236, gnl|bosTau2|chr3 (57374640-57373433)
               

               
               32-1236, gnl|Hg17|chr1 (61275812-61277070)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-1236, gnl|bosTau2|chr3 (57374640-57373433)
               

               
               32-1236, gnl|Hg17|chr1 (61275812-61277070)

	453-612, + strand, RNAz p=0.901604
	808-903, - strand, RNAz p=0.642824

	32-1236, gnl\|bosTau2\|chr3 (57374640-57373433)
	32-1236, gnl\|Hg17\|chr1 (61275812-61277070)