Non-Coding RNA Search

Ss1.1-Spl1-SPL010026F04.5

Sequence:


               
               CCAAGCTGTCCGCGTCTCGGGGAGCTCTCAGACCTGGGAGCGGGGGAGGGGCGCCGCGCC
CAACCTCAGGCATTTGAGCCGCTGAGAATCATCCAACCTACCCGGGTGGTCAGGCTTAAT
GACTGTCCCTGCCGCAACTAGCCATCCATAGACTGCCTTTGGCCCTGCTGATTTCTCTCT
AACGCAGATCAGGTACTTCTAAGCCAAGAAAACACTCAGGAAGCGTCCTCTAAATTGCAA
ACGATGATGGCCCGGTTGCCCGCCTCCTATACTAATGAGGAAACTGAGGCGAGGACCGGA
AGGGCAGGGAGCCGCGCCCCTCTCCGGGTGCCCCCAGCAGGCGGGGGCGTCCAGGAAGTG
GCTCGGGCCTGACCCTCGTCCCCTCCTCCTGCCCTCAACACCCGGAATCCGATGCTCCTC
AGGCGCCAGAAATAGCTCTGACCCGCTGGCTCTGGTCACTCACTCAAGGCCCGCATTCTT
TCAGGGGGTGGGGGGAAGAAAGGCGGGTAGTTACTGCTGAGGTCTGTCTCCCTTAAAGGG
GAGGCTCCTACAGACGCTCTCACTGTCCCTAGGGCTTACCTAGCCACCCCCCCACACCTC
AAAGGCCTCAGATGCTTCAGTTACTAGACCTGAACAATTACTCAACGGGTCGGGGTATGG
GACCTGTGGTGGACTCTGTTCCCTGTGCAGAATGTGTCCATCCCTTCCTGGGCCTGTGGC
CAGGCTGGAATTCCAGGCCCGCACTCTTGTCAGCTATTACATTCTGAACACAGAATTGGC
TACTGCCTGCCAGAGGTTGCTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGCTGTCCGCGTCTCGGGGAGCTCTCAGACCTGGGAGCGGGGGAGGGGCGCCGCGCC
CAACCTCAGGCATTTGAGCCGCTGAGAATCATCCAACCTACCCGGGTGGTCAGGCTTAAT
GACTGTCCCTGCCGCAACTAGCCATCCATAGACTGCCTTTGGCCCTGCTGATTTCTCTCT
AACGCAGATCAGGTACTTCTAAGCCAAGAAAACACTCAGGAAGCGTCCTCTAAATTGCAA
ACGATGATGGCCCGGTTGCCCGCCTCCTATACTAATGAGGAAACTGAGGCGAGGACCGGA
AGGGCAGGGAGCCGCGCCCCTCTCCGGGTGCCCCCAGCAGGCGGGGGCGTCCAGGAAGTG
GCTCGGGCCTGACCCTCGTCCCCTCCTCCTGCCCTCAACACCCGGAATCCGATGCTCCTC
AGGCGCCAGAAATAGCTCTGACCCGCTGGCTCTGGTCACTCACTCAAGGCCCGCATTCTT
TCAGGGGGTGGGGGGAAGAAAGGCGGGTAGTTACTGCTGAGGTCTGTCTCCCTTAAAGGG
GAGGCTCCTACAGACGCTCTCACTGTCCCTAGGGCTTACCTAGCCACCCCCCCACACCTC
AAAGGCCTCAGATGCTTCAGTTACTAGACCTGAACAATTACTCAACGGGTCGGGGTATGG
GACCTGTGGTGGACTCTGTTCCCTGTGCAGAATGTGTCCATCCCTTCCTGGGCCTGTGGC
CAGGCTGGAATTCCAGGCCCGCACTCTTGTCAGCTATTACATTCTGAACACAGAATTGGC
TACTGCCTGCCAGAGGTTGCTCAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               503-619, - strand, RNAz p=0.526558
               

               
               659-802, - strand, RNAz p=0.975486

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               503-619, - strand, RNAz p=0.526558
               

               
               659-802, - strand, RNAz p=0.975486

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               600-733, - strand, RNAmicro p=0.990949

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               600-733, - strand, RNAmicro p=0.990949

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               63-802, gnl|bosTau2|chr22 (37916253-37915512)
               

               
               63-802, gnl|Hg17|chr3 (49482345-49481606)
               

               
               63-802, gnl|Mm7|chr9 (107997366-107998122)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               63-802, gnl|bosTau2|chr22 (37916253-37915512)
               

               
               63-802, gnl|Hg17|chr3 (49482345-49481606)
               

               
               63-802, gnl|Mm7|chr9 (107997366-107998122)

	503-619, - strand, RNAz p=0.526558
	659-802, - strand, RNAz p=0.975486

	63-802, gnl\|bosTau2\|chr22 (37916253-37915512)
	63-802, gnl\|Hg17\|chr3 (49482345-49481606)
	63-802, gnl\|Mm7\|chr9 (107997366-107998122)